YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aqp-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVFQDKVAS ILRIEDQQFT RELLAECIGT FFLLLIGNAA NIQAAVAVGG NSTSCHIAWG  60
   61 IGFMFAVYLA ASVSGGHLNP AISVAQSILG NLPPWKIIPY AIAQVIGAFL GAAVAYFGHH 120
  121 DDLWKLDGGI RQVTGGQATA GLFTTFPPDH MSVWGSLLDQ IIGTAMLSGL VCLITDKRHQ 180
  181 IPTGVVPVLA GSIMSMVAMT FGANGGFAIN PARDFGPRVF CLCAGYGWEV FSAHGYYFWI 240
  241 PIVGALIGSI IGAWIYKIFV GLHGMNESLD IQPAKGFNVS VKVDREYSDS SGSY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.88
Transmembrane Helix	27	47	0.86
Non-Cytoplasmic	48	56	0.79
Transmembrane Helix	57	78	0.91
Cytoplasmic	79	96	0.86
Transmembrane Helix	97	119	0.91
Non-Cytoplasmic	120	152	0.95
Transmembrane Helix	153	174	0.91
Cytoplasmic	175	183	0.82
Transmembrane Helix	184	203	0.94
Non-Cytoplasmic	204	235	0.89
Transmembrane Helix	236	256	0.95
Cytoplasmic	257	294	0.95