YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34241
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	147	0.69
Transmembrane Helix	148	167	0.91
Cytoplasmic	168	175	0.75
Transmembrane Helix	176	194	0.92
Non-Cytoplasmic	195	199	0.66
Transmembrane Helix	200	223	0.80
Cytoplasmic	224	232	0.83
Transmembrane Helix	233	254	0.91
Non-Cytoplasmic	255	260	0.83
Transmembrane Helix	261	281	0.93
Cytoplasmic	282	301	0.94
Transmembrane Helix	302	320	0.95
Non-Cytoplasmic	321	328	0.75
Transmembrane Helix	329	348	0.95
Cytoplasmic	349	355	0.85
Transmembrane Helix	356	375	0.96
Non-Cytoplasmic	376	381	0.84
Transmembrane Helix	382	403	0.89
Cytoplasmic	404	412	0.83
Transmembrane Helix	413	433	0.88
Non-Cytoplasmic	434	441	0.79
Transmembrane Helix	442	462	0.95
Cytoplasmic	463	534	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISRRSYEQ FDEMKSENQE NNSKKKSSER LKKLDPDKFV EAYGAYGKYQ IFTYVLVQTL  60
   61 NFFYSSSMYI MSFVQLNLEK QCEYKNETIP ISETCQIETE SSKAFGNLNG EYCGIAENTL 120
  121 VNVTNQKAST NLLVDFDLSC SHWFFQEFGL TIFTIGAVIA VPFMSMLADR YGRKPIIVTT 180
  181 AILAFLANMA ASFSPNFAIF LILRAFIGAC SDSYLSVASV ATCEYLSEKA RAWITVVYNV 240
  241 AWSLGMVWTL LVTLMTDDWR WRYFIVSLPG VYGFALWYFL PESPHWLITK NKTEKLKKYI 300
  301 KTANRMVISL VYFAISFMSV ELGGDQVQAF LYSSLIEIPA GLAVIPLMMK MGRKMIVIWC 360
  361 LVFQTLALIG VTVFLDSYEF KLVIMLVAKV MATIIYSVHP IWATEQFPTS VRSLCFSLMN 420
  421 IPQSMGIIMS PYVKHIVMSP NWIPFVVIAL FSFISATLAF MLHETKNKKL PTDIESLSYP 480
  481 SETNDLSAYR RSKSSSSSVS ALSKTSVRSK KTLSSESVSK KLDTVNFSDK EYRI