YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nac-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	33	0.87
Non-Cytoplasmic	34	58	0.83
Transmembrane Helix	59	78	0.94
Cytoplasmic	79	86	0.89
Transmembrane Helix	87	106	0.91
Non-Cytoplasmic	107	131	0.84
Transmembrane Helix	132	155	0.70
Cytoplasmic	156	222	0.94
Transmembrane Helix	223	245	0.89
Non-Cytoplasmic	246	268	0.87
Transmembrane Helix	269	293	0.92
Cytoplasmic	294	313	0.98
Transmembrane Helix	314	337	0.94
Non-Cytoplasmic	338	353	0.97
Transmembrane Helix	354	372	0.85
Cytoplasmic	373	400	0.81
Transmembrane Helix	401	419	0.90
Non-Cytoplasmic	420	441	0.78
Transmembrane Helix	442	468	0.87
Cytoplasmic	469	482	0.76
Transmembrane Helix	483	503	0.89
Non-Cytoplasmic	504	520	0.74
Transmembrane Helix	521	546	0.86
Cytoplasmic	547	582	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKRGISSL LLIYKQSFVI WGALLIFSPL LMFVGDSHGL QAKCLYCVAV MGSYWVFEAL  60
   61 PLAITAFIPM ILFPLFGIMR SEEVARAYLP DTCFLFMGGL MVALAVEKCE LHARVALFVL 120
  121 KTVGSEPARV MAGFMGVTGF LSMWISNTAT TALMVPILQS VITELVSNHR MEDLVALCEA 180
  181 HHNSSRKHSV GMRRLSLPNE NNEIKREEMD TAMSPREQKM AKGLMLSVCF SANIGGAATI 240
  241 TGTASNLVLV GQLNELFPGA DTGVNFLSWL IFAFPMVFCC LIYCWCVLYL LYLRDAPKGS 300
  301 IIVTRKLQQK YNELHAFSFA EMAVIFCFAL LLVLWILREP QVVPGWGEMF KDEFVSDATS 360
  361 AMFIVILLFT LPEKLPSSRG SSEQRKASSG LLDWATVQDR FPWSVLFLLG GGFALAAGVK 420
  421 ESGLSHDIGA IMRYLDVFNH NIIMLICIII SVTLTNVCSN TVIASIFIPI VAELARSLEI 480
  481 DPLNFMLPVT ISASFAFLLP VATPPNAIVF SSGYLKVFDM FVSGLCVTLG CVVLSMLNML 540
  541 LWAGFVFNLH LFPQWAANPS PPLDVQDWAV ENNITFVGTS KL