YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.57
Transmembrane Helix	31	48	0.61
Cytoplasmic	49	94	0.77
Transmembrane Helix	95	109	0.34
Non-Cytoplasmic	110	142	0.49
Transmembrane Helix	143	165	0.83
Cytoplasmic	166	217	0.55
Transmembrane Helix	218	238	0.65
Non-Cytoplasmic	239	240	0.43
Transmembrane Helix	241	263	0.82
Cytoplasmic	264	321	0.86
Transmembrane Helix	322	346	0.75
Non-Cytoplasmic	347	364	0.78
Transmembrane Helix	365	385	0.86
Cytoplasmic	386	791	0.92
Transmembrane Helix	792	810	0.87
Non-Cytoplasmic	811	854	0.93
Transmembrane Helix	855	875	0.96
Cytoplasmic	876	923	0.96
Transmembrane Helix	924	945	0.89
Non-Cytoplasmic	946	951	0.66
Transmembrane Helix	952	972	0.89
Cytoplasmic	973	1035	0.94
Transmembrane Helix	1036	1057	0.93
Non-Cytoplasmic	1058	1064	0.71
Transmembrane Helix	1065	1086	0.86
Cytoplasmic	1087	1396	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPHFQKTPD ETKPDVNLES VEGYHPSSED SAGLISSILF SFVGFYWWRT RNAQTDTDLL  60
   61 EKPSKGISAK YAAQKLESKW ISSGPKRTHF LVGVWHCTKV SVMAHAISLC LEELTRVAQP 120
  121 LLLRELMSYY DIEEGQEFPY WPAMQVALII SLLSFVTVCI HHPYFHGLLK VGNHARVATG 180
  181 VLLYRKSLRI SLTSLFETNS GQIIQLLNTD AAKLEQAFLF AHYVWLCPLL MFFYAYILWS 240
  241 MFGFCCLLGF LVMMAIVSFQ VHYSYQLGVN RRNIGDKMDS RLKVMSEIIN GIKVIKMHGW 300
  301 ENAFAEKIRI LREDEIKAVG TSAFYSSMVM GIYFISAKIG LFVYIFACDY FDEILTTRGV 360
  361 FASSALFNSV RLPFALFLPL GLLFGRELFS TSRRIDLFFC LEEYSRITLE LDSTDTEDGS 420
  421 KNEKEGLTLK KIGEKPSWTL KCDKAEKTSV FLNKVTAVWY DKDEHDQKKK KKNFKALSDN 480
  481 DATVIAGEKK DEPLHVVYAV QDLSFEFVAG TCYGIIGSVG SGKSSLLLTI LSESRMTRGN 540
  541 LSVNGSFAYC AQEPWIFTGS IQDNIVFGSE FNKERYENAL ELCLLTPDLR QFANGDMTIV 600
  601 GDNGSTLSGG QRARVALARA VYADADIYLL DDPLSAVDAH VGKKLYENLI RGFLSDKLVI 660
  661 LVTHQIHFLS ELDSVILMKN NKMVGNGSLD ELKSTFTDDF IKLQAVETEV QSDELFVDGP 720
  721 PSSPPPSPVN IESMEKINKE SIFQRANSVL SGSKMSETEY VKEIVYESRK SGTISWSVYW 780
  781 EYTRGVINPL KYGIWLVVCV LITQLMNNFV DWWLNKWLVD LDMNNADNST SKEEFNRNVD 840
  841 VLGYTFNVTF QTYELTFIIS TVIMSILGVV RSVWFRNAQL MASRILHNSM FDCVLKTESE 900
  901 FFDKNSEGMI LNRFSKDIGL TDDLLAFTYF EFVFGTLTFV GIVGLVSMVR PIVILACAFI 960
  961 TAGFYFCRKM YVHRSRELKR IEAAARSPLN TTITSTVHGL STIRAYRKEN EMIEKFCALH1020
 1021 DVYMAAYNMG LLSARWFGIC IDFLVSVFVS IVAIVVVLQY ETLTVGEVGL CLVCAVQLSG1080
 1081 FFSWIMRQSA ELENGMVSVE RVLEYTKLKS EEEARRPHDA YLDKQLLNSW PTKGEIEFEN1140
 1141 VSVNYGETKV LKNLSFVVLG GQKIGVVGRT GAGKSTLIKI IFGLKEYCSG RVTIDGVDLD1200
 1201 HISLNFRRGG MSIIPQEPVI FSGTVRENLD PFDEYDDATI WFALEQCELK RSITKEKGLN1260
 1261 VELGQRGVSL SVGQRQLFCL ARAMIHRSKI LVIDEATANV DGVTDACIQK TIRDFFKNAT1320
 1321 IITVAHRLHT IMNSDNVMVF EKGELVEFDK PITLLDDQSS LFSRMAAQSG AENFDSLRAA1380
 1381 ALAHAIDDQS SYTDNS