YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lst-3
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFGGGKPP GQWHRPAAPG GAPQLSGFSA VNFGGVPMVG MGVPMGMVNQ AAFSSQGVLG  60
   61 MQGIMGAVPQ QSLPQQQPNF QQQNSLQQGT NMQQNSGAKN QRTFVGVVTK MLDTYGFVDD 120
  121 DVFFQHSVIR GSHPRVGDKV MVEANYNPSM PFKWNAYRIQ LLNAATQQEP ARQAPQQQQM 180
  181 HQPQRGGQES QRWGAAPASG TSDRADRNGG ARGNDSPLHR SSAARRHSPP PRRASPPRRT 240
  241 SSPKRDARPA REIRDSREPR EVRRSPPPRR AASPRKASSP SAPAKNDRKR ERSPSGSVAP 300
  301 SVRRESASPP RRRARIIPRY ECRAQKPALL SPIVSGSVLR HRYSKLYLPS DYVDLSFDWV 360
  361 RSFQLDLSLD LSNPIQFHVF NKDVDFIGEE EIQDLDPEDA DHRHQVKVLL LSHAGKSEVV 420
  421 KKAFCLMADG TTDDHQEPQS LLKNLHFLVG ARGKETMGIG GSWSPSQDGA DPNSATTMIR 480
  481 TAVRTTKSLT GIDLSSVSQW RKKAMLLPT

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.67
Transmembrane Helix	21	43	0.61
Cytoplasmic	44	50	0.43
Transmembrane Helix	51	68	0.57
Non-Cytoplasmic	69	509	0.97