YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hmit-1.3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.96
Transmembrane Helix	26	48	0.90
Non-Cytoplasmic	49	67	0.92
Transmembrane Helix	68	89	0.88
Cytoplasmic	90	99	0.79
Transmembrane Helix	100	120	0.94
Non-Cytoplasmic	121	125	0.72
Transmembrane Helix	126	147	0.91
Cytoplasmic	148	158	0.89
Transmembrane Helix	159	180	0.92
Non-Cytoplasmic	181	189	0.78
Transmembrane Helix	190	211	0.92
Cytoplasmic	212	281	0.98
Transmembrane Helix	282	303	0.56
Non-Cytoplasmic	304	318	0.58
Transmembrane Helix	319	342	0.90
Cytoplasmic	343	348	0.64
Transmembrane Helix	349	372	0.93
Non-Cytoplasmic	373	466	0.66
Transmembrane Helix	467	493	0.78
Cytoplasmic	494	504	0.53
Transmembrane Helix	505	528	0.83
Non-Cytoplasmic	529	534	0.54
Transmembrane Helix	535	556	0.91
Cytoplasmic	557	604	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQVAPVAAG AGSGQTRPSS DPKTGWFVYM LAFSAVIGGF LFGYDTGIVS AAMLYVPNAS  60
   61 GIKPLDSVWQ EIIVSITPGV AAIGSLCSGP GSDFLGRKKI IIGASVTFTI GAIICAAAWT 120
  121 KIILLIGRIL LGLAIGFASM IVPIYVSEAS PSHIRGKLVT GFQLMITVGL VIANIIGGAF 180
  181 SYVDPDQVGW RLMFAFAAVP AIIQFVCFLF LPESPRWLYE HGRTVEAREV LTRIYNGHTE 240
  241 WVDYEINEIS FSYEEELRAK AEHAGNGPTI IRILKTPHVR KAMIIGSLLQ MFQQLSGINT 300
  301 VMYYTGNIIR SAGVKDNHTT IWISVGTSAI NFLGTFIPIA LVERVGRRVL LLVSMIGVIL 360
  361 FLIAMGVSFL LINNDSLRTF DQQNYTLNYN PSVKHAAKCL KYSNCDFCVT DENCGFCESK 420
  421 VAKKGYCLPF PSDDSSDYSA TGICEFSNLT NNGTDFEWED TYCHTKFTVL PIIIMVFYLL 480
  481 SFSAGYAPLP WVLNAEFYPL WARSTAVSVS TACNWIFNLI VSLTFLSLSQ AATKYGTFFI 540
  541 YCGCTMVALV FVFFFVPETK GYSIDEVEML FMTKEERRKA QKVLDESKEG KHRNSVAMSF 600
  601 DTKF