YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dop-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLQWPLLG LFSVLIILAL FGNLLVCAAI LWDRSLRKQP ENLFLVSLAV SDLLVSVLVM  60
   61 LFAAVNDILG YWPFGQFYCQ FWISFDITTC TASILNLCAI SLDRYWHISR PMVYIRYCNR 120
  121 RRINYVIVLV WLISAGIGAA PLGFGFGSKV TINNLTGLPV CEMRLPLPYA IGSSMVSFFL 180
  181 PAMVMVILYT KLYLYARKHV RSIKTQLQQA TSFLIMQLAS EKIREIRTSI FSKLNFLCPT 240
  241 RFKNQRSPQD PHTPAAHNRS NISDQKARLT LGVIMGTFLV CWLPFFTVNI LRAWLPEIFS 300
  301 SKTIMAVTWL GYANSSANPL IYSIFNRDFR RAFKKIIVRV FGCCWEEPDL NKSIYAAPDN 360
  361 IERRRSCTRS SESAHDNNND ANATRLNLLS NNNEETIPE

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.96
Transmembrane Helix	8	32	0.90
Cytoplasmic	33	42	0.93
Transmembrane Helix	43	65	0.93
Non-Cytoplasmic	66	81	0.89
Transmembrane Helix	82	102	0.93
Cytoplasmic	103	122	0.89
Transmembrane Helix	123	145	0.91
Non-Cytoplasmic	146	168	0.91
Transmembrane Helix	169	193	0.84
Cytoplasmic	194	268	0.98
Transmembrane Helix	269	288	0.93
Non-Cytoplasmic	289	304	0.78
Transmembrane Helix	305	325	0.86
Cytoplasmic	326	399	0.92