YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dop-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLQWPLLG LFSVLIILAL FGNLLVCAAI LWDRSLRKQP ENLFLVSLAV SDLLVSVLVM  60
   61 LFAAVNDILG YWPFGQFYCQ FWISFDITTC TASILNLCAI SLDRYWHISR PMVYIRYCNR 120
  121 RRINYVIVLV WLISAGIGAA PLGFGFGSKV TINNLTGLPV CEMRLPLPYA IGSSMVSFFL 180
  181 PAMVMVILYT KLYLYARKHV RSIKTQLQQA TSFLIMQLAS EKIREVTAAT LKGEALLPPD 240
  241 SPATERTTMT VSRHYSRRST TTTTTATPRR GDKKTSSQNK VESIRTSIFS KLNFLCPTRF 300
  301 KNQRSPQDPH TPAAHNRSNI SDQKARLTLG VIMGTFLVCW LPFFTVNILR AWLPEIFSSK 360
  361 TIMAVTWLGY ANSSANPLIY SIFNRDFRRA FKKIIVRVFG CCWEEPDLNK SISSRYAAPD 420
  421 NIERRRSCTR SSESAHDNNN DANATRLNLL SNNNEETIPE

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.96
Transmembrane Helix	8	32	0.90
Cytoplasmic	33	42	0.93
Transmembrane Helix	43	65	0.93
Non-Cytoplasmic	66	81	0.89
Transmembrane Helix	82	102	0.93
Cytoplasmic	103	122	0.89
Transmembrane Helix	123	145	0.91
Non-Cytoplasmic	146	168	0.91
Transmembrane Helix	169	193	0.84
Cytoplasmic	194	326	0.99
Transmembrane Helix	327	346	0.93
Non-Cytoplasmic	347	362	0.78
Transmembrane Helix	363	383	0.86
Cytoplasmic	384	460	0.92