YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32858
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.80
Transmembrane Helix	25	46	0.93
Non-Cytoplasmic	47	63	0.78
Transmembrane Helix	64	87	0.78
Cytoplasmic	88	106	0.65
Transmembrane Helix	107	130	0.76
Non-Cytoplasmic	131	162	0.63
Transmembrane Helix	163	185	0.91
Cytoplasmic	186	198	0.78
Transmembrane Helix	199	218	0.92
Non-Cytoplasmic	219	232	0.81
Transmembrane Helix	233	255	0.95
Cytoplasmic	256	342	0.95
Transmembrane Helix	343	360	0.60
Non-Cytoplasmic	361	389	0.50
Transmembrane Helix	390	409	0.92
Cytoplasmic	410	421	0.54
Transmembrane Helix	422	441	0.66
Non-Cytoplasmic	442	447	0.50
Transmembrane Helix	448	467	0.68
Cytoplasmic	468	477	0.58
Transmembrane Helix	478	500	0.91
Non-Cytoplasmic	501	509	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVLLDVVT TTLASAINLE DFRHCFLWAL IVGICLAFLL GFGMGANDVA NAFGTSVGSK  60
   61 ALTLFQAYCL ATIFETLGAV LVGYNVIDTM RRGVVDVAVY NNSAGDFMVG QVAVLGGTAT 120
  121 WLLIATCLQL PVSTTHAVVG ATLGFSIACK GFQGIQWMKV VNIVASWFIS PIFAGTVSLI 180
  181 LYLFVDHVIL RTSNPVANGL MWLPIFYFAC LTFNMFMISY QGSKVLHLSN VPLWAAIVVS 240
  241 LGAGIIAAAV CYFLVNPRIR KYIAKGKEAR ESPTSSVVIS VTGDPELDKV AIRSESTTTN 300
  301 ASNSCDSLQT PSPSEPQGKI RKFFKWLFPD KSRVESEDTL RMFTSVQVLT ACFAGFAHGA 360
  361 NDVCNAIAPL VALIAVYRDF DVYQKKETPI TVLLYGVFAI CVGLWCLGHK VIRTVGTNMS 420
  421 EVNPASGFCI EFGAAVTALL ASKMGLPIST THCLVGAVVA VGSVKGGKET DWSLFRNVAF 480
  481 SWVVTLPVAG LFAALYMWLL HFTIPARYA