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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lat-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNKTTYSL LQTILVACLL TVTPTFASNK PTTDESGTIS HTICDGEAAE LSCPAGKVIS  60
   61 IVLGNYGRFS VAVCLPDNDI VPSNINCQNH KTKSILEKKC NGKQTCRFFV DTFLFDDACP 120
  121 MMSKYLEVQH ECHEATTTTT TTTTSTTTTD SSLIVDEEEE AQKDALNSDV IKPVKKKEDV 180
  181 FCSATNRRGV NWQNTKSGTT SSAPCPEGSS GKQLWACTEE GQWLTEFPNS AGCESNWISS 240
  241 RNSVLSGVIS SEDVSGLPEF LRNLGSETRR PMVGGDLPKV LHLLEKTVNV IAEESWAYQH 300
  301 LPLSNKGAVE VMNYMLRNQE IWGSWDVTKR KEFASRFILA AEKAMVASAK GMMTSAESNV 360
  361 IVQPAITVEI SHKIKMSSQP TDYILFPSAA LWNGQNVDNV NIPRDAILKI NKDETQVFFS 420
  421 SFDNLGAQMT PSDVTVAIAG TDQTEVRKRR VVSRIVGASL IENGKERRVE NLTQPVRITF 480
  481 YHKESSVRHL SNPTCVWWNH HELKWKPSGC KLSYHNKTMT SCDCTHLTHF AVLMDVRGHD 540
  541 LNEIDQTLLT LLTYVGCIIS IICLLLTFFA YLIFSRNGGD RVFIHENLCL SLAIAEITFL 600
  601 AGITRTEDSL QCGIIAVALM YMFLSALTWM LLEGYHIHRM LTEVFPSDPR RFTYLLVGYI 660
  661 PPAIITLVAY LYNSDGFGTP DHCWLSTQNN FIWFFAGPAC FIFCANSLVL VKTLCTVYQH 720
  721 TSGGYLPCRH DVDSGRSIRN WVKGSLALAS LLGVTWIFGL FWVEDSRSIV MAYVFTISNS 780
  781 LQGLFIFLFH VVFAEKMRKD VGHWMYRRGC GGSSNSSPNH KRHNVQRDLM SPGVNSSTGS 840
  841 DFLYNTNDKY LTNSDTTNRL VYNGIMNHPN QMSVYQQHPH HQIYEQQPGT YDYATIAYGD 900
  901 MMPGHRVAAP PAYQRLAVAE GRYGSQHQLY QGWHHRPPPE FSPPPPPLST GPPNSRHYGT 960
  961 GSSGRRPPSS KMSDDSAYSD GSSSMLTTEV TPQGQTVLRI DLNKPSMYCQ DL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle