YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	shk-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFGGQRRCI ESSDDNDSID SMSIQQKNKE KEEWKWAQSL ASRAAEMASG NSEEGKGMLL  60
   61 RNGDDRIRLP SPQRGTPDTS STQGHPYTDQ IVTINVSGMR FQTFESTLSR YPNSLLGDRN 120
  121 KRQHFFVSDT NEFFFDRHRT TFESILYIYQ SGGRVKRPEI VPIDIFLKEM RFFQMGDDLL 180
  181 EEFWIAEGYE KPKEVMMPNN KTQRKIWELM EYPDSSLSAR IIAFISIAVI ALSIISFCWE 240
  241 TVPSDIEEKP INNSATAELL DEMDEKHYSP FFWIELMCIL WFTIELILRF ISCPCKVTFA 300
  301 TSVLNIIDFV AIAPFFVNFF FADTSKSNSS MSFAVLRVLR LVRVFRVFKL SRHSVGLQIL 360
  361 GKTFRSSVQE FCLLIFFMAI ALVLFASGMY FAEQGEPNSK FTSIPASFWF VLVTMTTVGY 420
  421 GDLVPLSPFG KVVGGMCAMI GVLTLALPVP IIVANFKHFY RQENRLASMK SKGDDADDDI 480
  481 A

Type	Start	End	Confidence
Cytoplasmic	1	216	0.95
Transmembrane Helix	217	238	0.89
Non-Cytoplasmic	239	270	0.90
Transmembrane Helix	271	291	0.91
Cytoplasmic	292	300	0.72
Transmembrane Helix	301	322	0.88
Non-Cytoplasmic	323	370	0.70
Transmembrane Helix	371	392	0.92
Cytoplasmic	393	400	0.65
Transmembrane Helix	401	424	0.81
Non-Cytoplasmic	425	431	0.61
Transmembrane Helix	432	456	0.86
Cytoplasmic	457	481	0.69