YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-50
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFFEYLEF NSRINLGKLI DTLLTDYDTH LLPEAEGVNV TIELHVQGVS GISEITGDFS  60
   61 LDVMYSEIWQ DPRLSFKHLN VCATNITLKV SDFRKKIWTP DTCIINSKSS SIHSSPSENT 120
  121 FVILYENGLV WSNFRLNVKT PCSVNLKMFP FDSLSCEIVL ESYSFNTDEV RLMWHDVPIT 180
  181 MMEKVELPDF DLIGWSTDHQ RLEYPNGIWD RAKVKFTFAR RYGFYLFQSY FPTSLTVISS 240
  241 WVGFFFDVRS VSARITLGVS SLLALTFQFG NVLRHLPRVS YIKCLDVWMI FSVIFIFCTL 300
  301 VELAIVCQLN RWERERQIGS KVLGHWLNQI RKTRKKESKA DEGGGGGVGG LLRKRIPVLA 360
  361 QLKAAATDSN SGAATAMTTA IQPPNTNLNS ITNSDNSKLV ANNFTSIEHE TYAYEKKRGF 420
  421 SHCFQRFVYA ICPPDRDWTI TSVQVDRCSM IMFPLSFLIF NVVYWSIYFM KMDRPM

Type	Start	End	Confidence
Cytoplasmic	1	222	0.86
Transmembrane Helix	223	245	0.87
Non-Cytoplasmic	246	251	0.73
Transmembrane Helix	252	273	0.86
Cytoplasmic	274	283	0.75
Transmembrane Helix	284	306	0.89
Non-Cytoplasmic	307	449	0.82
Transmembrane Helix	450	469	0.91
Cytoplasmic	470	476	0.74