YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32661
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	207	0.79
Transmembrane Helix	208	229	0.75
Non-Cytoplasmic	230	448	0.95
Transmembrane Helix	449	470	0.93
Cytoplasmic	471	477	0.81
Transmembrane Helix	478	500	0.91
Non-Cytoplasmic	501	507	0.86
Transmembrane Helix	508	527	0.96
Cytoplasmic	528	547	0.88
Transmembrane Helix	548	574	0.83
Non-Cytoplasmic	575	583	0.83
Transmembrane Helix	584	608	0.90
Cytoplasmic	609	670	0.93
Transmembrane Helix	671	690	0.85
Non-Cytoplasmic	691	863	0.89
Transmembrane Helix	864	886	0.91
Cytoplasmic	887	891	0.76
Transmembrane Helix	892	914	0.87
Non-Cytoplasmic	915	921	0.78
Transmembrane Helix	922	944	0.92
Cytoplasmic	945	961	0.86
Transmembrane Helix	962	985	0.88
Non-Cytoplasmic	986	992	0.83
Transmembrane Helix	993	1013	0.89
Cytoplasmic	1014	1226	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSYFGASG PDPISRQSPA AVRFQRKVST GSAPTVPPPA VPPPESSADE EEPRASSNNN  60
   61 YSSTSTVAAP TREPTRVSTL KREEKEKKQK ERMERERREL EEKRVQEDEM KKEEHNHTVH 120
  121 PSLGERTSYV EEPPSTTTTL DRRDRKAEKA LVRRITNEMQ MATYVQQIDL STVKQPVGAY 180
  181 TQGVFRIRML RFAEAILRRT FWALGKFIAN HKIVSILVAL LCFATAFILP TLHKEHLYID 240
  241 LPFSHILGSD SDVISNGIGI SPKMQEFNSS NPAFSCMKWR DSNRFAVLLR TMASRDTILR 300
  301 KDAVLAYTAL KKKLDHFPVE KREFMTQCSL ECETDKDMVD RIIKKSPQVA LTYPETFVSM 360
  361 SKDSTNLTRV YLGAAIGGVE TDTDGAISKA TSLLMNFELK DDLTGKEHNS WHRHFEDQTR 420
  421 LTAASNISLM SWSPETFKDT VVASLKDQYW CLQFCVIILF VFCFLGSFGI NAYQSKPCLG 480
  481 IMIFITLVVG SITGLSMQFY RDLPVDPLVY PICFVTIGIG LLWLFQLQFS WSRYSSAAVH 540
  541 PTEKIAFILA HDAPGIAASA VVIVLTFLAM GAAIQNGHMV SSFLGIASSV AILLVFTVFF 600
  601 ISVFVFIGGS REARGVKWYQ IFKTGDTHFT APQLASFDSA SLFSLHDRLL DARPCASRAV 660
  661 GAFVISPKIR YPIIMLCTAY VFFAIYGFYN TGIDIKEEYF LPAGSSEKSF IEQYRDQFGK 720
  721 TTQFVELTIE SSIEYHDHEV QNNIFDIMDF AIAEGYATRA VNWLAEFAKF EKASIYDVNP 780
  781 DTFVPVVNLV FLPSETYRKY TSDIVMDRFQ TQIIKSRMYL ELTAKGFAER TSFVDTILKK 840
  841 AAAKGIPLSV DIPSSMSLRH DISVFTSGML AFGVAIVMLF FVSLLLLGQP ALTVMLLITS 900
  901 IAVLGETVGY AYFWSVPMNI VTLTMALAGN ALTCVIVIAF CYSYSMSGKS QIRAGVRIQY 960
  961 TFQATLVPVL FACIVPVLTF LPLLYVDVPV VNHLFKIVVL NATASLIHYL FFLPNMMLAF1020
 1021 SERFGFSCTS FQCAELCCDM DDESSIYYIP TGGRAIHPEG LYHHPSYTYT VPKPLMNAPP1080
 1081 PHYLAIAAPP VNSIYGQTEY TSRGEMKRVS RRNRRHSESS IGETENDGTP GRDRESRRRR1140
 1141 QRRAVSRDSE IYEDLPSPRA VNSSRSTSPR RQQPGSMRRP NNHHSGSQNP RPQAFHYDEG1200
 1201 AQWRPYVQPS PYMFYPGPVY GQQQRR