YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32376
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSLPNYD RTSDDVDASK EVVDTPIQTI SSSHVSFQIT TDPVPSMDYL SIHEDDTSMS  60
   61 SSERTIERGF SRYGRKRSSV RMLLDEVNMT DRKTSWMDTE HRVILNVGGI RHETYSHVLK 120
  121 KIPATRLSRL TPNLANYDPV LNEYFFDRHP GVFSMILNYY RTGKLHYPTN VCGPLFEEEL 180
  181 EFWGLDANQV EPCCWMTYTQ HRDTQDTLAV IESLDLDGDP PTQEEIAKKF GWEDDYYTGN 240
  241 MSQWQRLKPR VWALFDEPWS SKYARVISSL SVAFILASTC SFILKTDPSF QIPDIDVFYS 300
  301 LRVVDEGGFK NYHKTIGTDK PVTSPHPNFF YVDLICNIWF TIELLIRSLF CPSFHKFVRS 360
  361 PLTIIDVIST GAFFFESLLH AILIQTGSLV TLDFLSMICV LRLFKLTQHF SGLKILIQTF 420
  421 KASAQELFLL VFFVILAIVI FAALVYYAER SQLNKDNQFT SIPLGLWWSL VTISTVGFGD 480
  481 MVPKTYLGML VGSLCALMGV LTIALPVPVI VSNFSNLYSH SQARAKLPKK RRRVLQAHEV 540
  541 KPALLGVKQH HGKHRKKSSS ATFNQPPANF KNANGGPSMH DNSASKLMA

Type	Start	End	Confidence
Cytoplasmic	1	262	0.72
Transmembrane Helix	263	284	0.64
Non-Cytoplasmic	285	328	0.87
Transmembrane Helix	329	351	0.74
Cytoplasmic	352	361	0.71
Transmembrane Helix	362	384	0.78
Non-Cytoplasmic	385	388	0.52
Transmembrane Helix	389	406	0.83
Cytoplasmic	407	426	0.80
Transmembrane Helix	427	448	0.94
Non-Cytoplasmic	449	458	0.83
Transmembrane Helix	459	479	0.86
Cytoplasmic	480	486	0.62
Transmembrane Helix	487	511	0.86
Non-Cytoplasmic	512	589	0.83