YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32375
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTEHRVILN VGGIRHETYS HVLKKIPATR LSRLTPNLAN YDPVLNEYFF DRHPGVFSMI  60
   61 LNYYRTGKLH YPTNVCGPLF EEELEFWGLD ANQVEPCCWM TYTQHRDTQD TLAVIESLDL 120
  121 DGDPPTQEEI AKKFGWEDDY YTGNMSQWQR LKPRVWALFD EPWSSKYARV ISSLSVAFIL 180
  181 ASTCSFILKT DPSFQIPDID VFYSLRVVDE GGFKNYHKTI GTDKPVTSPH PNFFYVDLIC 240
  241 NIWFTIELLI RSLFCPSFHK FVRSPLTIID VISTGAFFFE SLLHAILIQT GSLVTLDFLS 300
  301 MICVLRLFKL TQHFSGLKIL IQTFKASAQE LFLLVFFVIL AIVIFAALVY YAERSQLNKD 360
  361 NQFTSIPLGL WWSLVTISTV GFGDMVPKTY LGMLVGSLCA LMGVLTIALP VPVIVSNFSN 420
  421 LYSHSQARAK LPKKRRRVLQ AHEVKPALLG VKQHHGKHRK KSSSATFNQP PANFKNANGG 480
  481 PSMHDNSASK LMA

Type	Start	End	Confidence
Cytoplasmic	1	169	0.87
Transmembrane Helix	170	188	0.79
Non-Cytoplasmic	189	232	0.89
Transmembrane Helix	233	255	0.77
Cytoplasmic	256	265	0.73
Transmembrane Helix	266	288	0.79
Non-Cytoplasmic	289	292	0.53
Transmembrane Helix	293	310	0.83
Cytoplasmic	311	330	0.80
Transmembrane Helix	331	352	0.94
Non-Cytoplasmic	353	362	0.83
Transmembrane Helix	363	383	0.86
Cytoplasmic	384	390	0.62
Transmembrane Helix	391	415	0.86
Non-Cytoplasmic	416	493	0.84