YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32106
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.15
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWLKNLRVP ILLAIILVVY NEYFIFFIAF SSCQWPCKYG RCSESSVKAF MISDTHLLGK  60
   61 INGHWLDKLK REWQMYQSFW ISTWIHSPDV TFFLGDLMDE GKWAGRPVFE AYAERFKKLF 120
  121 GDNEKVITLA GNHDLGFHYA IMPETLEMFK KEFRRGLIDE MKIKKHRFVL INSMAMHGDG 180
  181 CRLCHEAELI LEKIKSRNPK NRPIVLQHFP LYRKSDAECD QVDEQHEIDL KEMYREQWDT 240
  241 LSKESSLQII DSLNPKAVFG GHTHKMCKKK WNKTGNSEYF YEYTVNSFSW RNGDVPAMLL 300
  301 VVIDGDNVLV SSCRLPSEIL QIMVYIFGGI GILAKMYNDL ITPAPLEWNV NNIAVCTAII 360
  361 LVMIINVVAL IFTIFWCLRS KDEGGEIDSN GVVINQFVEP NIRMKFKMPK IRGDAIHDSS 420
  421 QDVFELRVPR NGNQFDACHE QTVIVARNKR SRTYSVPLES RPRTQSTGSE QIP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.58
Transmembrane Helix	9	30	0.81
Non-Cytoplasmic	31	82	0.60
Transmembrane Helix	83	97	0.15
Cytoplasmic	98	318	0.55
Transmembrane Helix	319	337	0.83
Non-Cytoplasmic	338	352	0.61
Transmembrane Helix	353	377	0.88
Cytoplasmic	378	473	0.69