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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRINRWIWWA TVILLYLRTG LAADFFRSSE ENDRKSSDDL DNFNSTKIEP DKPKTAKELG  60
   61 VKSCESNQDC VHDGVCHRGN DGHGICMCPR SCPAITPKQC GYNYRTPSTC LLMDADYRSK 120
  121 YDVKEPTCYS RKCVCPPQFD DVHVTANQKP LRLNSTLLPT KCDKRDLAVV ARAHPSTSVS 180
  181 KGIDVTLFCC INVDPEGFID VASVFFIQNG TIMREATSHP FAPRNGLARR VHEKYSCWEL 240
  241 EIKNAQTSDS GSYMCRVTAS ASDLDVTDTM QFEVKAPRQI KNLTVNPSER DAIVTWESEG 300
  301 GEDMAIDLRL VRRTDTRGQV VFSKDNLTSP VSIKDLRAAT PYTLFVSGNN GQVPFEFTEH 360
  361 FTTKQKRPFP PKEEDVRVLN SGSALSCEVE WKSPAEPNGR ITKYFVSVRG AMRKSDGSLT 420
  421 PDDLPAAVEV DKRCANWDGD ENTSKHNGIN PIDFANEFYS CKFGPLKPNR NYTVTVWAEN 480
  481 SAGRSLPAVF HKNCVTNYAQ PDMVETPQPL LSNNHSTFSL TFPQPPDDIN GPISCYYIAI 540
  541 VPLPANVSLD ILPKSEEIVM HSFSKVFTNN LLPSSAEEKR FFAYIAESYV QLPEETTIGD 600
  601 GVRVSDLKAC NVQYLSRYSS EDLALRRGLK YTGFLIVRVD KEEELNRKDV RNGADPNIFR 660
  661 NLIDKSVSPT SRTRTASPMS RHLRQLHLSG PAYGYSAYFK PILLDTESSS SGFGIFMKII 720
  721 LPFLLFLAFA TGVTMFFVNR KGHMLSTWCP LFTKMTSKDV VERTLLKQTF GAIPVDDLPT 780
  781 EYVVRHRDTD FLFAQEYESL PHFQLDTVAS NRKENAIKNR YNDIRAFDDT RVKLKKINGD 840
  841 DYSDYINANF IKSWKEKKLF IAAQAPVDAT IGDFWRMVWE QESYLIVMVA NLTEKNRQQC 900
  901 AKYWPDEQIT RYGDIIVEPA SFSFHSDYAI RAFDIAHIGE LM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle