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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.18
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRINRWIWWA TVILLYLRTG LAADFFRSSE ENDRKSSDDL DNFNSTKIEP DKPKTAKELG  60
   61 VKSCESNQDC VHDGVCHRGN DGHGICMCPR SCPAITPKQC GYNYRTPSTC LLMDADYRSK 120
  121 YDVKEPTCYS RKCVCPPQFD DVHVTANQKP LRLNSTLLPT KCDKRDLAVV ARAHPSTSVS 180
  181 KGIDVTLFCC INVDPEGFID VASVFFIQNG TIMREATSHP FAPRNGLARR VHEKYSCWEL 240
  241 EIKNAQTSDS GSYMCRVTAS ASDLDVTDTM QFEVKEHARR THSYWYKRPK KVMPPSSSSS 300
  301 LKTSDDDDDS TPRQIKNLTV NPSERDAIVT WESEGGEDMA IDLRLVRRTD TRGQVVFSKD 360
  361 NLTSPVSIKD LRAATPYTLF VSGNNGQVPF EFTEHFTTKQ KRPFPPKEED VRVLNSGSAL 420
  421 SCEVEWKSPA EPNGRITKYF VSVRGAMRKS DGSLTPDDLP AAVEVDKRCA NWDGDENTSK 480
  481 HNGINPIDFA NEFYSCKFGP LKPNRNYTVT VWAENSAGRS LPAVFHKNCV TNYAQPDMVE 540
  541 TPQPLLSNNH STFSLTFPQP PDDINGPISC YYIAIVPLPA NVSLDILPKS EEIVMHSFSK 600
  601 VFTNNLLPSS AEEKRFFAYI AESYVQLPEE TTIGDGVRVS DLKACNVQYL SRYSSEDLAL 660
  661 RRGLKYTGFL IVRVDKEEEL NRKDVRNGAD PNIFRNLIDK SVSPTSRTRT ASPMSRHLRQ 720
  721 LHLSGPAYGY SAYFKPILLD TESSSSGFGI FMKIILPFLL FLAFATGVTM FFVNRKGHML 780
  781 STWCPLFTKM TSKDVVERTL LKQTFGAIPV DDLPTEYVVR HRDTDFLFAQ EYESLPHFQL 840
  841 DTVASNRKEN AIKNRYNDIR AFDDTRVKLK KINGDDYSDY INANFIKSWK EKKLFIAAQA 900
  901 PVDATIGDFW RMVWEQESYL IVMVANLTEK NRQQCAKYWP DEQITRYGDI IVEPASFSFH 960
  961 SDYAIRAFDI AHIGECGPDV IPNGNGVEYA NVPIVKGQFA NNSRRILQYH FTNWNDYKAP1020
 1021 ECSTGLLRFM YRLRELPQFN NSPVVIHCSA GVGRTGTFIS IDSMLDQCLA EDKANIFEFV1080
 1081 CNLRRQRNLM VQSLEQYVFI YKALAEWHMY GDTDEDVRDF EDHYQRLCAS NRDRAVSFNQ1140
 1141 QSSTNGSISP RVAIVSSRES MTTSNGETGL EEEFKKLERN LTTPLSSNFA AKDENLLKNR1200
 1201 YEAAVPFDKY RVILPPTIGH ADSSYINASH IKGYFFDYIA AQDPVSEGTA FDFWRMIADQ1260
 1261 NVTTVVMLSD ETDWSDVEKY WPIDGSGTEC HFGSERNSVN VTCVSEEHHQ DFIIRNLSYS1320
 1321 MKDNESMPAN QEVVQYSYTG WPSDSIVPKS ANSLMNLIEM VLQRQSSLMG SQAPIVVHCR1380
 1381 NGSSESGIFI CISLLWLRQK AEQRIDVFQT VKGLQSHRPM MFTRFEQYSF CYRALADYIS1440
 1441 KTYR

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