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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.18
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRINRWIWWA TVILLYLRTG LAADFFRSSE ENDRKSSDDL DNFNSTKIEP DKPKTAKELG  60
   61 VKSCESNQDC VHDGVCHRGN DGHGICMCPR SCPAITPKQC GYNYRTPSTC LLMDADYRSK 120
  121 YDVKEPTCYS RKCVCPPQFD DVHVTANQKP LRLNSTLLPT KCDKRDLAVV ARAHPSTSVS 180
  181 KGIDVTLFCC INVDPEGFID VASVFFIQNG TIMREATSHP FAPRNGLARR VHEKYSCWEL 240
  241 EIKNAQTSDS GSYMCRVTAS ASDLDVTDTM QFEVKAPRQI KNLTVNPSER DAIVTWESEG 300
  301 GEDMAIDLRL VRRTDTRGQV VFSKDNLTSP VSIKDLRAAT PYTLFVSGNN GQVPFEFTEH 360
  361 FTTKQKRPFP PKEEDVRVLN SGSALSCEVE WKSPAEPNGR ITKYFVSVRG AMRKSDGSLT 420
  421 PDDLPAAVEV DKRCANWDGD ENTSKHNGIN PIDFANEFYS CKFGPLKPNR NYTVTVWAEN 480
  481 SAGRSLPAVF HKNCVTNYAQ PDMVETPQPL LSNNHSTFSL TFPQPPDDIN GPISCYYIAI 540
  541 VPLPANVSLD ILPKSEEIVM HSFSKVFTNN LLPSSAEEKR FFAYIAESYV QLPEETTIGD 600
  601 GVRVSDLKAC NVQYLSRYSS EDLALRRGLK YTGFLIVRVD KEEELNRKDV RNGADPNIFR 660
  661 NLIDKSVSPT SRTRTASPMS RHLRQLHLSG PAYGYSAYFK PILLDTESSS SGFGIFMKII 720
  721 LPFLLFLAFA TGVTMFFVNR KGHMLSTWCP LFTKMTSKDV VERTLLKQTF GAIPVDDLPT 780
  781 EYVVRHRDTD FLFAQEYESL PHFQLDTVAS NRKENAIKNR YNDIRAFDDT RVKLKKINGD 840
  841 DYSDYINANF IKSWKEKKLF IAAQAPVDAT IGDFWRMVWE QESYLIVMVA NLTEKNRQQC 900
  901 AKYWPDEQIT RYGDIIVEPA SFSFHSDYAI RAFDIAHIGE CGPDVIPNGN GVEYANVPIV 960
  961 KGQFANNSRR ILQYHFTNWN DYKAPECSTG LLRFMYRLRE LPQFNNSPVV IHCSAGVGRT1020
 1021 GTFISIDSML DQCLAEDKAN IFEFVCNLRR QRNLMVQSLE QYVFIYKALA EWHMYGDTDE1080
 1081 DVRDFEDHYQ RLCASNRDRA VSFNQQSSTN GSISPRVAIV SSRESMTTSN GETGLEEEFK1140
 1141 KLERNLTTPL SSNFAAKDEN LLKNRYEAAV PFDKYRVILP PTIGHADSSY INASHIKGYF1200
 1201 FDYIAAQDPV SEGTAFDFWR MIADQNVTTV VMLSDETDWS DVEKYWPIDG SGTECHFGSE1260
 1261 RNSVNVTCVS EEHHQDFIIR NLSYSMKDNE SMPANQEVVQ YSYTGWPSDS IVPKSANSLM1320
 1321 NLIEMVLQRQ SSLMGSQAPI VVHCRNGSSE SGIFICISLL WLRQKAEQRI DVFQTVKGLQ1380
 1381 SHRPMMFTRF EQYSFCYRAL ADYISKTYR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle