YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.89
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	37	0.97
Transmembrane Helix	38	58	0.94
Cytoplasmic	59	66	0.86
Transmembrane Helix	67	86	0.89
Non-Cytoplasmic	87	98	0.69
Transmembrane Helix	99	117	0.90
Cytoplasmic	118	127	0.79
Transmembrane Helix	128	150	0.90
Non-Cytoplasmic	151	161	0.79
Transmembrane Helix	162	184	0.87
Cytoplasmic	185	191	0.88
Transmembrane Helix	192	215	0.83
Non-Cytoplasmic	216	233	0.86
Transmembrane Helix	234	255	0.93
Cytoplasmic	256	264	0.73
Transmembrane Helix	265	283	0.88
Non-Cytoplasmic	284	287	0.74
Transmembrane Helix	288	307	0.88
Cytoplasmic	308	321	0.87
Transmembrane Helix	322	344	0.82
Non-Cytoplasmic	345	351	0.81
Transmembrane Helix	352	376	0.89
Cytoplasmic	377	389	0.92
Transmembrane Helix	390	413	0.79
Non-Cytoplasmic	414	418	0.74
Transmembrane Helix	419	442	0.79
Cytoplasmic	443	670	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKLFVFLL ICYATADEVD KKEAKHGFQL FHWNWDHIHK VYVITTWLLV ASLAKILFNL  60
   61 MKPLSKWLPD SSLLIIVGLG LGYFLNQTTL SGVHLDSHAF FLYLLPPIIF DAGYFMPNRA 120
  121 LFKNFDSVLV FSVLGTLWNT FAIGGSLLIM SKYQLFTMPF TTFEILVFSA LISAVDPVAV 180
  181 IAIFEEIHVN EFLFINVFGE ALFNDGVTVV LYQMFKSFAL IGSENLSPWD YATGGLSFFV 240
  241 VALGGAAIGI IFAIATSLAT KYTQGIKILA PVFIFLLPYM AYLTAEMVSL SSIIAIAVCG 300
  301 MLMKQYIKGN ITEAATNSVK YFTKMLAQCS ETVIFMFLGL STLTSEHHVD FIFIGATLVF 360
  361 CLIYRAIGII VQCFILNKFR AKKFEVVDQF ILSYGGLRGA IAYGLVVSIP ASIQAKPMFI 420
  421 TTTICVIYFT VFLQGITIRP LVNCLNVKKK EHREATMVES VYNKYLDYMM SGVEDIAGQR 480
  481 GHYSFIENFE RFNAKVIKPV LMRHEKRQSF DATSIIRAYE KITLEDAIKL TKVKSTLQNK 540
  541 RLEKVKSEVR VAPEQTTVTP KDVQLARFMQ SGENIDQLYT LFSDLLDKKL NELKVQADKV 600
  601 DKANDDDIQD DYMAEMGSHS NLGFMHHSAD QLDSDSVFQR RGRRLSTGDL KGHCGTSRKP 660
  661 KHSMFELRHV