YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ent-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.90
Transmembrane Helix	29	49	0.88
Non-Cytoplasmic	50	89	0.81
Transmembrane Helix	90	108	0.68
Cytoplasmic	109	116	0.60
Transmembrane Helix	117	137	0.91
Non-Cytoplasmic	138	142	0.65
Transmembrane Helix	143	164	0.88
Cytoplasmic	165	178	0.64
Transmembrane Helix	179	201	0.81
Non-Cytoplasmic	202	211	0.60
Transmembrane Helix	212	233	0.93
Cytoplasmic	234	276	0.70
Transmembrane Helix	277	298	0.91
Non-Cytoplasmic	299	314	0.70
Transmembrane Helix	315	337	0.85
Cytoplasmic	338	347	0.62
Transmembrane Helix	348	368	0.84
Non-Cytoplasmic	369	379	0.58
Transmembrane Helix	380	404	0.85
Cytoplasmic	405	415	0.64
Transmembrane Helix	416	439	0.87
Non-Cytoplasmic	440	445	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVELQPL NKTKKVEEES PEPEDKGNLV FYIILLHGIG TLMPWNMLIT ISYDYFESYK  60
   61 MLANSTIDMD TGVVTGYPTV YSSNFQSFQT IASQVPNLLL NLLNIFIVVK GGLASRITVG 120
  121 LSIVAVCVIT TMMFIYVETS TWLTGFFTLT IITIIVLNGA NGVYQNSIFG LASELPFKYT 180
  181 NAVIIGNNLC GTFVTLLSMS TKAVTRNILD RSFAYFSIAL ITLVFCFISF HILKKQRFYQ 240
  241 YYSTRAERQR NKNDEAVDSE GKVANYIATF KEAFPQLINV FLVFFVTLSI FPGVMMYVKD 300
  301 EKKGGVYDFP LPQKYFMDVT TFLQFNVFAF IGSIVAGRKQ WPAPNKLWIP VYLRLLYIPF 360
  361 FIFCNYLPET RSLPVFFEST WLFVIIAASM SFGSGYFSGL AMMYTSKTVD PSKAQVAGMM 420
  421 AGFFLISGIV SGLIFTMVIK MVVTA