YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31271
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	59	0.91
Non-Cytoplasmic	60	90	0.92
Transmembrane Helix	91	112	0.80
Cytoplasmic	113	121	0.66
Transmembrane Helix	122	142	0.90
Non-Cytoplasmic	143	149	0.77
Transmembrane Helix	150	171	0.85
Cytoplasmic	172	182	0.85
Transmembrane Helix	183	204	0.92
Non-Cytoplasmic	205	211	0.75
Transmembrane Helix	212	233	0.88
Cytoplasmic	234	273	0.97
Transmembrane Helix	274	293	0.73
Non-Cytoplasmic	294	311	0.69
Transmembrane Helix	312	332	0.69
Cytoplasmic	333	343	0.88
Transmembrane Helix	344	366	0.90
Non-Cytoplasmic	367	372	0.79
Transmembrane Helix	373	393	0.94
Cytoplasmic	394	407	0.76
Transmembrane Helix	408	430	0.85
Non-Cytoplasmic	431	439	0.76
Transmembrane Helix	440	460	0.93
Cytoplasmic	461	479	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRILSQNEN ECSKNDEDVN IRRAIDDEAL ESKRWKRRHV VAILALLGFA NIYAMRANLS  60
   61 IAIVEMTSGT ERKVNGTTLH VLGDFENWTP MTQGVVLSSF FYGYIVSQLP GGYLAYTHGA 120
  121 KTIFFAGTFG TAVFTLLTPP FARMGYGMLV FARFMEGLLE GVTYPAMHVI WSRWAPPMEQ 180
  181 TKLATFAFSG SYFGTVVAMP LSAYLGEHFG WPMIFWFFGA LGVIWCMVWY KTVHDRPEDD 240
  241 PKISTSELAL LQRDAVSQNH YIVPWAQILR SKPVWAVIVA HSAQNLGFYI MLTNLPKMLK 300
  301 DIAGYNVEKA GIASSLPYFL MGFQIITGGQ LCDYLRRDKH YDTLFVRKMA CALGFIGQSV 360
  361 FLFLVMTTSN SLLLVLFFSI SIGLGGICWC GFSVNHLDLA PQYAGHLMAT SNTFATIPGI 420
  421 FGPLLVGAIV QNGTIGEWNV IMYIIISAYL LGAAIFWKFA DATLQPWAAE HTSFVGQLE