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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sax-3
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNRKTLLCT ILLVLQAVIR SFCEDASNLA PVIIEHPIDV VVSRGSPATL NCGAKPSTAK  60
   61 ITWYKDGQPV ITNKEQVNSH RIVLDTGSLF LLKVNSGKNG KDSDAGAYYC VASNEHGEVK 120
  121 SNEGSLKLAM LREDFRVRPR TVQALGGEMA VLECSPPRGF PEPVVSWRKD DKELRIQDMP 180
  181 RYTLHSDGNL IIDPVDRSDS GTYQCVANNM VGERVSNPAR LSVFEKPKFE QEPKDMTVDV 240
  241 GAAVLFDCRV TGDPQPQITW KRKNEPMPVT RAYIAKDNRG LRIERVQPSD EGEYVCYARN 300
  301 PAGTLEASAH LRVQAPPSFQ TKPADQSVPA GGTATFECTL VGQPSPAYFW SKEGQQDLLF 360
  361 PSYVSADGRT KVSPTGTLTI EEVRQVDEGA YVCAGMNSAG SSLSKAALKV TTKAVTGNTP 420
  421 AKPPPTIEHG HQNQTLMVGS SAILPCQASG KPTPGISWLR DGLPIDITDS RISQHSTGSL 480
  481 HIADLKKPDT GVYTCIAKNE DGESTWSASL TVEDHTSNAQ FVRMPDPSNF PSSPTQPIIV 540
  541 NVTDTEVELH WNAPSTSGAG PITGYIIQYY SPDLGQTWFN IPDYVASTEY RIKGLKPSHS 600
  601 YMFVIRAENE KGIGTPSVSS ALVTTSKPAA QVALSDKNKM DMAIAEKRLT SEQLIKLEEV 660
  661 KTINSTAVRL FWKKRKLEEL IDGYYIKWRG PPRTNDNQYV NVTSPSTENY VVSNLMPFTN 720
  721 YEFFVIPYHS GVHSIHGAPS NSMDVLTAEA PPSLPPEDVR IRMLNLTTLR ISWKAPKADG 780
  781 INGILKGFQI VIVGQAPNNN RNITTNERAA SVTLFHLVTG MTYKIRVAAR SNGGVGVSHG 840
  841 TSEVIMNQDT LEKHLAAQQE NESFLYGLIN KSHVPVIVIV AILIIFVVII IAYCYWRNSR 900
  901 NSDGKDRSFI KINDGSVHMA SNNLWDVAQN PNQNPMYNTA GRMTMNNRNG QALYSLTPNA 960
  961 QDFFNNCDDY SGTMHRPGSE HHYHYAQLTG GPGNAMSTFY GNQYHDDPSP YATTTLVLSN1020
 1021 QQPAWLNDKM LRAPAMPTNP VPPEPPARYA DHTAGRRSRS SRASDGRGTL NGGLHHRTSG1080
 1081 SQRSDSPPHT DVSYVQLHSS DGTGSSKERT GERRTPPNKT LMDFIPPPPS NPPPPGGHVY1140
 1141 DDIFQTATRR QLNRGSTPRE DTYDSVSDGA FARVDVNARP TSRNRNLGGR PLKGKRDDDS1200
 1201 QRSSLMMDDD GGSSEADGEN SEGDVPRGGV RKAVPRMGIS ASTLAHSCYG TNGTAQRFRS1260
 1261 IPRNNGIVTQ EQT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle