YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31739
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	31	0.92
Non-Cytoplasmic	32	64	0.96
Transmembrane Helix	65	86	0.93
Cytoplasmic	87	92	0.87
Transmembrane Helix	93	113	0.93
Non-Cytoplasmic	114	121	0.74
Transmembrane Helix	122	142	0.89
Cytoplasmic	143	151	0.76
Transmembrane Helix	152	175	0.88
Non-Cytoplasmic	176	183	0.85
Transmembrane Helix	184	203	0.96
Cytoplasmic	204	240	0.98
Transmembrane Helix	241	267	0.81
Non-Cytoplasmic	268	281	0.80
Transmembrane Helix	282	302	0.90
Cytoplasmic	303	316	0.90
Transmembrane Helix	317	336	0.95
Non-Cytoplasmic	337	343	0.80
Transmembrane Helix	344	365	0.93
Cytoplasmic	366	382	0.77
Transmembrane Helix	383	403	0.88
Non-Cytoplasmic	404	410	0.92
Transmembrane Helix	411	433	0.91
Cytoplasmic	434	458	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRIWGNYFR IIIVLLSFMC LVSVCSNYII INFTFICMKD DLSQTTEVNG TLKSIYDYTP  60
   61 TEKKYILWAV AFGTMVGTFP INILYVKYGA RIPFFSAGVL SAVTTGLTPW AAAQSMWIFV 120
  121 ALRFLQGVAY SADFAAIGIV ISKWAPLDET AIFIATLTSF TSIASIITNG ASGVICDTLG 180
  181 WQWSFYFHSA TCLLIFCCWV LIYQDDPTFH KSVSVKELGW IQKNKSEAHI KVGMKVPYKA 240
  241 IFTSPVVLTV WLCAFTELST LILIATYGPI YFRSVLGFDI KIIGFYLGIM IAIHLPFRFV 300
  301 CAFLSDKTKC ISEMGKIHIF NTLAVGFVGI SFLIFGKIPP EHNISAVVCL AILECFISFN 360
  361 SGGFYKCGTL HARQFSSIVI SAIQFTKCIS LFSGPALVAF FVTDESNQTQ WSHVFMTLAG 420
  421 FSFVANILSF IFFTDKPAKW TEDDAAVKYS KNEDVVKI