YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sptl-3
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGTQNGKAV ANGKAKNGNI TEKVIKLDPC PKPAFYVFWL VQLNITMMLV GAMVATLFDK  60
   61 WGIVKTKRSK GDPRMESFQP LGNSFDATYT DHIYRQSTDV VNRPISGVPG AIVRLKDRYT 120
  121 DDHGWTQKYT GTESEVINLG SYNYLGFSHR SGVCAEAAAA HIDKYGINCG GSRQEIGNHV 180
  181 AHKSVESTIA QYLNVEDAIV FPMGFATNSM NIPSLVDKGS LILSDRLNHA SLVTGCRLSG 240
  241 AHTVVFRHND ASDCERKLRD ALCGVSPKTG EKYNKVLIII EGIYSMEGTI VNLPAFIAVK 300
  301 KKYNCYLFLD EAHSIGAVGP SGRGVAEYWG CNPRDIDIMM GTLTKSFASA GGYMGGSKKV 360
  361 IDHIRRYSAG TCYGVTMSPP LIAQVERAVL IMSGKDGTDI GRQKAIQLLE NSRYFRKELR 420
  421 KRGFLVYGNN DSPVVPLMTF YITKVVEFSR RMLKHNIGIV AVGYPATPLL EARVRFCLSA 480
  481 DHTKEHLDYI LEAVEQVGME TGTFYGTKIV DE

Type	Start	End	Confidence
Cytoplasmic	1	34	0.48
Transmembrane Helix	35	58	0.62
Non-Cytoplasmic	59	512	0.77