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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-8
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSENDVLI PVENEKKTTN WTKFVKVVWQ CTSKWEKFLF VIGVVSAICT GLTQPFMSYT  60
   61 FGEVSQAFVR ITAAVNNASL DPSDLEKAYE MFHADMNNVV IHFGLVGCAF MFFGFIQFSL 120
  121 FKYIGDNTTY RLRHKFILRL LKKDAKYFDT ISTGYLSTVL NDNLERFREA FNEKIAFIIC 180
  181 FSTDFAIGTA LAFYTSWTLA SYGSVFAFGI VISGLLNSTS MMKSNEKQSM HYSNAGAIAF 240
  241 QALCSFKTVI SLNGQTQELE KYSAELKEGE KFGSRRAFFL ATSRGLSHFF CNALNGTILY 300
  301 VGADLIYNKT MNTVAIVTLF HYMLFSAFSL GEAFLHISYL LNAINSATPI FDVLTSDDDM 360
  361 IENNQDNEQT DSNKTIQGML SFNNVKFAYP SRPDVDILRG ISFDVKQGEC IALVGASGSG 420
  421 KSTIVQLLLH FYNIQSGTIK IGDSHLHDIN LKQLRNAIGV VSQEPVLFNT TIEENIRFGN 480
  481 PNATSSEIYE ALRKANAYDF VCNIKDGLKT IVGERGAQLS GGQKQRIAIA RVLVKNPAIL 540
  541 LLDEATSALD SASERAVQLA LKKASEGRTT IIIAHRLSTI RHCDKIMVMS NGKIAEVGSH 600
  601 EELISMDREY SNLVRAQFFD SQSVEEDING QGAEEVIQKT PPNLNDGEPL EELLKETSSD 660
  661 IEIKSNIWEV LRECRPDAFL LSMAVIGSAI QGCNFPILSQ IIVQTYKAYA MDGENILTYG 720
  721 HFWAAMFLVL GVIRPITLYC QFFFFGKVSE KLSTRLRIKS FQHLLSLPCA FYDDPKHSPT 780
  781 RLVNRLNTDP SNIKAAVDAR LGSLLMSMVS FSLAILIACY YSWKLTLQVV LFFPVLYYAK 840
  841 FLYKKTTTIS IKEDSVAFEN SNKIAIEVLD NMKTVKALNM EARVINLVME YLAVLKTSYP 900
  901 RRSVVMGLAN GFSAGCSQIV YAISFKFGTY LILQKEVIPM DMYLSLITLS YTSNMAGSAI 960
  961 SYMPDFRKAI HSAGLIFNLF TYPATMPFNS DTGSRSITKG EVNGENVKFH YHQRPDYTVL1020
 1021 DSVNLKVEAG KTLAIVGPSG SGKSTIISLL EMFYRADQGF IKIDNDNVEN INLDHLRSNL1080
 1081 GLVSQGPVLF NCSIRDNILY GLTRNISQTE IENALQIANA FNFVFQLPQG LDTIVGDRGA1140
 1141 QLSGGQKQRI AITRAILRNP KLLLLDEATS ALDTESEKIV QNALDTASER LSTIVVAHRL1200
 1201 STIINADSIA VLRNGKVVEQ GTHNQLLAVK GDYWRLVQHQ KSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle