YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tag-140
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESDQNASQL IHQVLHDAFL AADLGNYTEA VNLLDKPPAW QTWGIGFAIV SGCSFSAPLG  60
   61 ILLLPCLSKS LYERIMTFLV AVGIGALSGS TIFIMLPQAF HLTSFEHFEY HTKSLIILCA 120
  121 LYAFFTVDRM LQYILEFRRR RQTKRRIHAS TIASLMNTPT TKRRDNGHNT TEETIVPSEP 180
  181 PTITRLQVPD LHNHHRFRRE SELSDVERTE QQEKEMAELA NDLEMALTNN VLARTFSTRR 240
  241 RVAVVSGGLD DIEFRSPKLS SHHTNGNTSQ FLDVINNEFH RRMTPLSSRP GSPVTINVEE 300
  301 PKESYEMKQK SEKPGLNHQD NSDSMSVSIR VVEKKVIEPA AMEVASVAYM IIFGSSANNF 360
  361 VDGMSMGAAF SDNLLRGLSI GIAVISQQFP QELGTLAILV KSGLGLKKTL LFNMVPIVLS 420
  421 FLGFSIGVML DSVDDSYDEY IFAISSGMYM YIFLGTLIPE IRESTNELIK ENLAESILVS 480
  481 ILQACGILFG TTFMYFMSRV NSVDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.94
Transmembrane Helix	43	66	0.90
Cytoplasmic	67	74	0.90
Transmembrane Helix	75	96	0.93
Non-Cytoplasmic	97	113	0.79
Transmembrane Helix	114	132	0.95
Cytoplasmic	133	409	0.87
Transmembrane Helix	410	430	0.95
Non-Cytoplasmic	431	439	0.83
Transmembrane Helix	440	458	0.96
Cytoplasmic	459	476	0.85
Transmembrane Helix	477	497	0.93
Non-Cytoplasmic	498	505	0.92