YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-58
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLTVKSSP PKKAKGISKF RRKKKQPPPD STVFVAWALR SVRESLIQVD PLAAALAHQA  60
   61 RKTNSVPAVS RTPLLLQFTP FGPPLSAYHV TARWEGANIN SQSALLDADD GATVITDTIK 120
  121 DDQDDKEPKS CPQQTVKYIK ILTPHVILVS VLIGYLCLGA WILMLLETRT ELLARSKKLV 180
  181 RLTNLMSNFT AESWKMLNNA QHGVSNMDEG EWAATFREWM VRVSETVDDR RPIRRELNRP 240
  241 DDLSNMHNKW TFPTAILYVL TVLTTCGYGE VSVDTDVGKV FSVAFALVGI PLMFITAADI 300
  301 GKFLSETLLQ FVSFWNRSVR KVKQWMSRIR HGRRKSLQST GGPNDTLDIL GVDGTEEKLW 360
  361 FPIGAYVSCI CIYCSIGSAM FITWERTWSF IHAFHFGFNL IVTVGLGDIV VTDYIFLSLI 420
  421 VAFVIVGLSV VTMCVDLAST HLKAYFTRIH YFGRAKRFLG MSEELKEIVA LLGAMRRKKG 480
  481 GKVTWNDVRD FLDNELRDRP FEPHELLMKL RFIDETSSGM STIRHNSFQS DFFRESEYIR 540
  541 RVAALRPEQP AYL

Type	Start	End	Confidence
Cytoplasmic	1	141	0.72
Transmembrane Helix	142	165	0.87
Non-Cytoplasmic	166	249	0.73
Transmembrane Helix	250	271	0.75
Cytoplasmic	272	279	0.72
Transmembrane Helix	280	301	0.88
Non-Cytoplasmic	302	359	0.85
Transmembrane Helix	360	382	0.88
Cytoplasmic	383	390	0.70
Transmembrane Helix	391	411	0.87
Non-Cytoplasmic	412	415	0.72
Transmembrane Helix	416	439	0.87
Cytoplasmic	440	553	0.94