YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-5
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.39
Transmembrane Helix	43	63	0.94
Non-Cytoplasmic	64	69	0.50
Transmembrane Helix	70	93	0.81
Cytoplasmic	94	189	0.56
Transmembrane Helix	190	213	0.93
Non-Cytoplasmic	214	225	0.61
Transmembrane Helix	226	245	0.70
Cytoplasmic	246	253	0.48
Transmembrane Helix	254	273	0.45
Non-Cytoplasmic	274	293	0.55
Transmembrane Helix	294	319	0.84
Cytoplasmic	320	327	0.45
Transmembrane Helix	328	347	0.65
Non-Cytoplasmic	348	348	0.43
Transmembrane Helix	349	369	0.80
Cytoplasmic	370	383	0.79
Transmembrane Helix	384	406	0.88
Non-Cytoplasmic	407	413	0.77
Transmembrane Helix	414	435	0.88
Cytoplasmic	436	450	0.81
Transmembrane Helix	451	470	0.90
Non-Cytoplasmic	471	480	0.75
Transmembrane Helix	481	503	0.89
Cytoplasmic	504	630	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLWTISTI LLISSTVAGS NNGNTRLDMA AQRRASNIHR MDTIILLTYV SVMVLIVVTA  60
   61 WAFKHYRFRF IHESGVTLFY GLLIGFVIRY FGLGLLQSQT FDVITKNKTI VKEPPDYLML 120
  121 EVKPEGGSRV SFHYELIEGF FADKRKKIEQ QIEQKSVFSP EVFFNMLIPP IIFNAGYSLK 180
  181 KRHFFRNIGS ILAIVFIGTT ISCFGTGCLM FVFTSIFQMG YSFKELLFFG ALISATDPVT 240
  241 IISVFNDMNV EADLFALIFG ESALNDAVAI VLSEVIENFS TSSEAITLQD FGSAIAGFAG 300
  301 VFFGSLMLGF MIGCMNAFLT KMTLISEHAL LESSLFVLIS YISFLVAEVC GLTGIVSVLF 360
  361 CGIAQAHYTY NNLSDESQSN TKHFFHMVSF IMESFIFCYI GVSVFVTNNQ RWSFSFLLFS 420
  421 LISITASRAL FVYPLSWLLN IRRRPKIPKR YQHMILFAGL RGAMAFALAG RNTSTENRQM 480
  481 IFATTTAVVI VTVLVNGGLT SWMIDYLQIK HGKDAIEEGQ RLENSMSSSP ADQHSDLDES 540
  541 VPVTMSPGLN PWDKAFLPRK WYHFDASFMK PLLTHATPSL EQTLPPFCLP LTSLLTSSRQ 600
  601 RAYVSAEPFN TIVQSGIPLI DGSGCDEESV