YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.76
Transmembrane Helix	39	59	0.73
Cytoplasmic	60	70	0.91
Transmembrane Helix	71	92	0.89
Non-Cytoplasmic	93	107	0.78
Transmembrane Helix	108	129	0.83
Cytoplasmic	130	138	0.66
Transmembrane Helix	139	159	0.75
Non-Cytoplasmic	160	173	0.70
Transmembrane Helix	174	194	0.65
Cytoplasmic	195	295	0.75
Transmembrane Helix	296	313	0.52
Non-Cytoplasmic	314	332	0.70
Transmembrane Helix	333	354	0.91
Cytoplasmic	355	409	0.80
Transmembrane Helix	410	432	0.79
Non-Cytoplasmic	433	436	0.68
Transmembrane Helix	437	458	0.88
Cytoplasmic	459	519	0.96
Transmembrane Helix	520	542	0.89
Non-Cytoplasmic	543	554	0.81
Transmembrane Helix	555	577	0.80
Cytoplasmic	578	965	0.99
Transmembrane Helix	966	988	0.86
Non-Cytoplasmic	989	1027	0.87
Transmembrane Helix	1028	1050	0.86
Cytoplasmic	1051	1092	0.95
Transmembrane Helix	1093	1112	0.90
Non-Cytoplasmic	1113	1116	0.71
Transmembrane Helix	1117	1137	0.90
Cytoplasmic	1138	1201	0.93
Transmembrane Helix	1202	1223	0.75
Non-Cytoplasmic	1224	1228	0.76
Transmembrane Helix	1229	1250	0.49
Cytoplasmic	1251	1534	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLVRELVC GSDYELLETG WRNNSNIPQV TNCGQHTDFS TIPTLFLVIF SPILFYELYK  60
   61 SRNSYLRSFS AISLRIIFCC LLVVDLTATV IYDFYLLFTK SPLYNAIHFY GDLVQYAGFC 120
  121 LALVLTIACR NRGIITSGVI TLYWLLVVVC GVPELRYYIT GRLYKEYEIH SCRAALYVFA 180
  181 YVCSALELFL SCFADTPSNG YIGKNSCPEY TASFLNQLTF QWFSGLAYLG NKKSLEKEDL 240
  241 WDLNERDKAE NIIPSFIENL IPEVEGYRRK IKKNPEAAIP KNHPSILIPI FKTYKFTLLA 300
  301 GGCYKLMFDL LQFVAPELLR QLISFIEDKN QPMWIGVSIA LLMFLSSLLQ SMILHQYFHE 360
  361 MFRLGMNIRS VLTSAVYTKT LNLSNEARKG KTTGAIVNLM SVDIQRIQDM TTFIMLFWSA 420
  421 PLQILLSLYF LWKLLGVSVL AGFVILILLI PFNSFISVKM RNCQMEQMKF KDERIKMMSE 480
  481 ILNGMKVLKL YSWEKSMEKM VLEVREKEIR VLKKLSYLNA ATTLSWACAP FLVAVLTFGL 540
  541 YVLWDPENNV LTPQITFVAL ALFNILRFPL AVFAMVFSQA VQCSASNTRL KEFFAAEEMS 600
  601 PQTSIAYGGT DSAIKMDGGS FAWGSKEEDR KLHDITFNIK RGQLVAIVGR VGSGKSSLLH 660
  661 ALLGEMNKLS GSVQVNGSVA YVPQLAWIQN LSLRNNILFN RPYDAKLYQN VIENCALVQD 720
  721 LESLPAEDRT EIGEKGINLS GGQKQRVSLA RAVYQNAEIV LLDDPLSAVD SHVGKHIFEN 780
  781 VISTATGCLG TKTRVLLTHG LTYLKHCDQV IVLKDETISE MGTYQELMNS NGAFSEFLEE 840
  841 FLLEESKHKG RSVSFGEDSK EVNELLRDLD QVSPAIRQRI QSQMSQEIEK TDDKNAEIIR 900
  901 NGLHKDEQTA HSSIGKSEEK ESLLGAISPK EKTPEPPKQT KTQLIEKEAV ETGKVKFEVY 960
  961 MSYFRAIGIK IALVFFLVYV ASSMLGVFSN LYLARWSDDA KEIALSGNGS SSETQIRLGI1020
 1021 YAVLGMGQAT SVCAASIIMA LGMVCASRLL HATLLENIMR SPMAFFDVTP LGRILNRFGK1080
 1081 DIEAIDQTLP HSIRAMVMTI FNVISTVFVI IWATPWAGIG FLVLGFVYFV VLRFYVSTSR1140
 1141 QLKRLESASR SPIYSHFQES IQGASSIRAY GVVDKFIRES QHRVDENLAT YYPSIVANRW1200
 1201 LAVRLEMVGN LIVLSSAGAA VYFRDSPGLS AGLVGLSVSY ALNITQTLNW AVRMTSELET1260
 1261 NIVAVERINE YTITPTEGNN SQSLAPKSWP ENGEISIKNF SVRYRPGLDL VLHGVTAHIS1320
 1321 PCEKIGIVGR TGAGKSSLTL ALFRIIEADG GCIEIDGTNI ADLLLEQLRS RLTIVPQDPV1380
 1381 LFSGTMRMNL DPFFAFSDDQ IWEALRNAHL DSFVKSLQEG LHHHISEGGE NLSVGQRQLI1440
 1441 CLARALLRKT KVLVLDEAAA AVDVETDSLL QKTIREQFKD CTVLTIAHRL NTVMDSDRLL1500
 1501 VLDKGCVAEF DTPKKLLSNP DGIFYSMAKD ANVV