YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31182
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.97
Transmembrane Helix	87	108	0.90
Non-Cytoplasmic	109	122	0.84
Transmembrane Helix	123	144	0.89
Cytoplasmic	145	151	0.74
Transmembrane Helix	152	173	0.91
Non-Cytoplasmic	174	182	0.76
Transmembrane Helix	183	205	0.86
Cytoplasmic	206	212	0.84
Transmembrane Helix	213	235	0.88
Non-Cytoplasmic	236	243	0.78
Transmembrane Helix	244	266	0.92
Cytoplasmic	267	286	0.95
Transmembrane Helix	287	307	0.94
Non-Cytoplasmic	308	324	0.90
Transmembrane Helix	325	346	0.94
Cytoplasmic	347	355	0.87
Transmembrane Helix	356	377	0.93
Non-Cytoplasmic	378	384	0.92
Transmembrane Helix	385	407	0.92
Cytoplasmic	408	422	0.92
Transmembrane Helix	423	444	0.90
Non-Cytoplasmic	445	458	0.81
Transmembrane Helix	459	481	0.89
Cytoplasmic	482	486	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKPFIISP FMPISTQISV DGPRSSALSA KINYESTAER LSIKESEGSE SDSDEESAIS  60
   61 DEEQAVPFLK SALHTVSALS SRQLLSISML SLANLCSTIA FSCIAPFYPA EAKLKNLSET 120
  121 QTGIVFGIFE FTMFIISPLF GKYIIFIGAR TMFIVGIAVT GVTAILFGFL NFLPSGNTFF 180
  181 WFSVLVRILE AVGDAAFVTS SFAIAAKSFP KNVAFVVGIL ETFAGLGYTA GPVIGGFFYD 240
  241 IGGFQLPFLV LGIVLLVASV LAFFLIENTK DDESNPEDKG MLEILRLPQI WLPIFSVVSC 300
  301 AISLSFLDPT LSNHLESFKL TPTEIGLMFL LCGGFYTVMC PVFGAIMDRL HNGENLLLFG 360
  361 SIATLLSMFF IGPTPLLNGY VEKDLWVIGI SLAVLGLAAS ALYIPCFQMC LDEVKDKGFD 420
  421 DNFHTYGCVS GIFQAAFGFG SFIGPTFGSV VVERVGFRWT TTMIAFLHII LSTVVLLGII 480
  481 IKKCRR