YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	101	0.97
Transmembrane Helix	102	119	0.91
Cytoplasmic	120	128	0.76
Transmembrane Helix	129	147	0.91
Non-Cytoplasmic	148	155	0.74
Transmembrane Helix	156	173	0.95
Cytoplasmic	174	186	0.75
Transmembrane Helix	187	207	0.92
Non-Cytoplasmic	208	218	0.83
Transmembrane Helix	219	241	0.89
Cytoplasmic	242	294	0.76
Transmembrane Helix	295	320	0.88
Non-Cytoplasmic	321	348	0.73
Transmembrane Helix	349	370	0.88
Cytoplasmic	371	380	0.79
Transmembrane Helix	381	404	0.76
Non-Cytoplasmic	405	412	0.75
Transmembrane Helix	413	437	0.86
Cytoplasmic	438	452	0.81
Transmembrane Helix	453	472	0.76
Non-Cytoplasmic	473	481	0.66
Transmembrane Helix	482	502	0.80
Cytoplasmic	503	749	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSQKTLLVI LTLLLSYNVF CTGDTNGTLA QDPADQLLNT VPENFTNNIE YPQNNNNNTS  60
   61 ETDESMDAEG EWVQSAPPEE IEEAKHLLDP VHVDFEHTHK PLAFVFLIIL VTLAKPTLHW 120
  121 PVLRKLPESV VLMLYGVLMA TAVKALMRID PGQLDTFMFF MILLPAIVND AGLSMQKKEF 180
  181 TIALPKILLF AVVGTVVHAL LLAATMYGIE PIFSFKPGFL HLFVFATLIS AVDPVSVLST 240
  241 FAELDVKKSL FILIFGESLC NDAVTIVLYR TSINVIKTSD ASDEMLTITS VVGSCVVQFM 300
  301 IVCGFGLLCG AVVGFAGVFI MKNMVGHQMN QPIFQLFCPY LAYLLAETGH YSGILASILC 360
  361 AAIMSYYMAA NMCVEMEFAA FTFSKTGSSL SESCIFFYLG VSLVSYNHEF DFYFIAVTVF 420
  421 CCTLYRFLVT CTLSAFYNLF ASEKNRIPFT DQLVVTHAGI RGAVCFGLVQ IIDERIIPAK 480
  481 PYFVTTTLAM IFVTSILQGC TIKFVMKCLK IPGDDGTKQK DPKALRWLTH LNDKYIKKFL 540
  541 VSENTYLPTD ETFRNLGLPK AVSTALRIGE RSHTDLQRHG EVSHTPAPSV GRPTIAPFDF 600
  601 GNMEEENNRL PSTGRRTPVA RSQTRYSRHF IYAIPNETDN YLTCPVSASK RPPFDPSQVY 660
  661 QHQNTISNPG DDRARCYNRR HNSMSGADEM ELKQLNQTVQ KKLSRTITSG TKQFVVNPDE 720
  721 AIREESPATI PKKRATFEDD EISKIDESE