YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31456
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.96
Transmembrane Helix	73	97	0.86
Non-Cytoplasmic	98	108	0.84
Transmembrane Helix	109	132	0.84
Cytoplasmic	133	141	0.70
Transmembrane Helix	142	164	0.89
Non-Cytoplasmic	165	168	0.64
Transmembrane Helix	169	192	0.87
Cytoplasmic	193	198	0.88
Transmembrane Helix	199	218	0.90
Non-Cytoplasmic	219	231	0.67
Transmembrane Helix	232	253	0.92
Cytoplasmic	254	547	0.98
Transmembrane Helix	548	568	0.88
Non-Cytoplasmic	569	586	0.87
Transmembrane Helix	587	607	0.93
Cytoplasmic	608	613	0.87
Transmembrane Helix	614	633	0.92
Non-Cytoplasmic	634	640	0.69
Transmembrane Helix	641	663	0.88
Cytoplasmic	664	674	0.72
Transmembrane Helix	675	696	0.91
Non-Cytoplasmic	697	704	0.74
Transmembrane Helix	705	726	0.93
Cytoplasmic	727	771	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARRRPSMR TRMKAEDVSC WVEHNQQPFS PSDEPRVRFE APAPVSARSD DSDAESVESL  60
   61 TERPVYKDGG YGWLVVLASF LMHAVCDGAS FCFGIVFVKI QEHFQCGRFV SMITASMFLS 120
  121 LPLIMSPVAG IVSDILGCRM SIIIGASICT VSCIIAMFCS HIFFFMISFG LGCGVGMSFI 180
  181 YNAAIVIVTY YFEKRRGLAT SFAVSGTGVG TVIYPILLNL SMIYLASFVS DIRIILIFFA 240
  241 VMYFVIAVIG FFIKDVEWES DKTDFKLRKF QKYIAKMDDE KENNTNPTDA FMRHAISLPN 300
  301 LNILNNHSGS IQSICDAAKA ERKSDKPTRS KSVALFDNKH QMSSIPEYSM LNTNLANLEH 360
  361 LDLELANSPC TTVRAQRRRV ISKVSMSVDQ INELEDEAFH INLFQSSTES ESDDESSSDD 420
  421 SEMSNDGDSS SSELSEKNLD EPTTKLINKN LENVAFRATS SVPNSARMNR NSVAAGTSNM 480
  481 FGGRVIASNA IQSRHATNLI AMGKIPSAPM LVARKNRKSM IGKPIQGFYK KWLETEKPIY 540
  541 QEVIHCRAYI YLALSVLCLY FILDVPYVCF YEYSIDTLKM EESEANYIYY SIGISNFISV 600
  601 LLFGTLADWT RKHITTIYAS SMVGVGITIM FSTRINSLVE LVIVGVCFGV TITSNYVLQS 660
  661 ILVTICFEDV NLFQVAYSLI AMIEGVASLI GPPIFALVRE ATGGYTVVFF ISGIFALASG 720
  721 FFGFMFSYEM NKRNTGDKDS IESGKPTELT NGNNRQTSTG SGAEQETLLD V