YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-27
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEARWISLL LSLVTLSVAA YDIDCKWKSN ITDIEDVAHH KYQVLEECLF YKLTSDADRM  60
   61 QDKSNALMML PPTVAAGETL EVQVLDGSIT EMWMNEVFKE MNINGFLKLS WKDRRLRWNP 120
  121 EEWKTEVLRL KSMGRLWSPD INSDKLQTGS QSTDFVNYHD IQSNYNGNVT ARLEFRMKAQ 180
  181 CQIDYTEYPN DRKHCCFNLQ SNLYKRYVRF IMEHEGAHEM LNTKNTKTNW HIDPMYTWIS 240
  241 KMNQENDNRA ERLEVCVGVV RKSSTLAVEL TLPVLISALI LLLAPFFGKF NQQIYVKMFA 300
  301 LLLQFLSFQF LAEKTPQLGF GDNIPKIYVF YAFTIGMTVL SLIATVMISA MSRVKRKVPP 360
  361 AHRYTLLASL LNANLCCGSE EEPTTDGTSS KMSQDATSDW LQVHSALNNL SSILLIFIYI 420
  421 IGAIVIAF

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	266	0.99
Transmembrane Helix	267	287	0.90
Cytoplasmic	288	293	0.85
Transmembrane Helix	294	312	0.93
Non-Cytoplasmic	313	326	0.91
Transmembrane Helix	327	350	0.89
Cytoplasmic	351	405	0.93
Transmembrane Helix	406	427	0.89
Non-Cytoplasmic	428	428	0.94