YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-33
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASKKIGMM AFTKLACLLL LFYQFSLVSS ISQNELNELS RKFKYYHSAV RPAAPDNFVS  60
   61 DRNGTFFNIP VEIHLLATRI VNRNLYLEVI IVMTWIDERL RLRELQDRFS MPSEYPPWHP 120
  121 SLVFAPPVTS KYTTLAPTSG TVNSYNTIKT TVECQTNAWK YPFESFTCTL SVGPEGDETL 180
  181 TVAQFHDLRS HTQKLLTNVF LGDYPTCSLE FIFKSEWPRA LLSSFLPSIL IVSSVFFAQW 240
  241 KRRKIQILVS LAAMLCSQRP YTSTTLMDLW LCANFIHSVF LVFVDLTLPA RRVRYTLMVH 300
  301 VDEEKKQANP VKIMTSGRFF GCSSASFEFI KKLSTNKLCT IKFHTISGNL HSVSLRLSSS 360
  361 HTIYLADTEH SGPLRYVNHV IDYLMKKEHK PRTTIVTACP GPTPIQRQIT TAMLGNRKRA 420
  421 ALFCIFLSYL TFLLIYAIIV IVID

Type	Start	End	Confidence
Signal Peptide	1	30	0.91
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	219	0.98
Transmembrane Helix	220	238	0.91
Cytoplasmic	239	244	0.79
Transmembrane Helix	245	262	0.62
Non-Cytoplasmic	263	268	0.58
Transmembrane Helix	269	288	0.69
Cytoplasmic	289	420	0.98
Transmembrane Helix	421	443	0.92
Non-Cytoplasmic	444	444	0.99