YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ced-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLILLVLLA TWQVVVDTRA PTFPDKLTQQ LQQQGTTEPQ GDHVCTVKTI VDDYELKKVI  60
   61 HTVVYNDTEQ CLNPLTGFQC TVEKRGQKAS YQRQLVKKEK YVKQCCDGYY QTKDHFCLPD 120
  121 CNPPCKKGKC IEPGKCECDP GYGGKYCASS CSVGTWGLGC SKSCDCENGA NCDPELGTCI 180
  181 CTSGFQGERC EKPCPDNKWG PNCVKSCPCQ NGGKCNKEGK CVCSDGWGGE FCLNKCEEGK 240
  241 FGAECKFECN CQNGATCDNT NGKCICKSGY HGALCENECS VGFFGSGCTQ KCDCLNNQNC 300
  301 DSSSGECKCI GWTGKHCDIG CSRGRFGLQC KQNCTCPGLE FSDSNASCDA KTGQCQCESG 360
  361 YKGPKCDERK CDAEQYGADC SKTCTCVREN TLMCAPNTGF CRCKPGFYGD NCELACSKDS 420
  421 YGPNCEKQAM CDWNHASECN PETGSCVCKP GRTGKNCSEP CPLDFYGPNC AHQCQCNQRG 480
  481 VGCDGADGKC QCDRGWTGHR CEHHCPADTF GANCEKRCKC PKGIGCDPIT GECTCPAGLQ 540
  541 GANCDIGCPE GSYGPGCKLH CKCVNGKCDK ETGECTCQPG FFGSDCSTTC SKGKYGESCE 600
  601 LSCPCSDASC SKQTGKCLCP LGTKGVSCDQ KCDPNTFGFL CQETVTPSPC ASTDPKNGVC 660
  661 LSCPPGSSGI HCEHNCPAGS YGDGCQQVCS CADGHGCDPT TGECICEPGY HGKTCSEKCP 720
  721 DGKYGYGCAL DCPKCASGST CDHINGLCIC PAGLEGALCT RPCSAGFWGN GCRQVCRCTS 780
  781 EYKQCNAQTG ECSCPAGFQG DRCDKPCEDG YYGPDCIKKC KCQGTATSSC NRVSGACHCH 840
  841 PGFTGEFCHA LCPESTFGLK CSKECPKDGC GDGYECDAAI GCCHVDQMSC GKAKQEFEAL 900
  901 NGAGRSTGLT WFFVLLIVAL CGGLGLIALF YRNKYQKEKD PDMPTVSFHK APNNDEGREF 960
  961 QNPLYSRQSV FPDSDAFSSE NNGNHQGGPP NGLLTLEEEE LENKKIHGRS AAGRGNNDYA1020
 1021 SLDEVAGEGS SSSASASASR RENPYADISS PDPVTQNSAN KKRAQDNLYT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle