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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: hmr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWNILLILL ISNLDEVLAK TLLKLPSNAP PGWLISDLQF QNLIGDSEIA TLQPSIFSTN  60
   61 FEVEDGYRII TNTTVTQFHG ELFELFLNVK EQNFQRLVTL HVYVDPRGTS QQPATFLSTV 120
  121 YHATVYTSQQ PGSTVVFSKP ITVRNRKNFV ISPISKIDKI SKYSSPFSVM TRGKSVDIVM 180
  181 MKQKLEEDDI TRHVIFLGAF TEKTGEMIAQ TKVIIDVIDS GDVHFLLKSK KSIAKFASAI 240
  241 PANSTVFDVE KRNLSEPLLF HLEEPSRFFK IDQFSGRVST VLPVGYGTYH IHVVARNQKK 300
  301 QRSDAWLEIS VKKEQKLEPM TSSRSRRHLD DIVFRIPENT TMEDIEKKDM KIPLFAGETI 360
  361 GEINVAKEWL KIDDDGKIHL LKPLNYEKTS SIIATVPING LQSTRTQTIR IHVADIDEPP 420
  421 SFVNSPLPML AVVPLNPTIG RIVYQFVARD EHGDGDSNVL YKTIDVIPAG SFIVDPKSGV 480
  481 VRTGWSKYER GDTYRISAQA MDLSPSDNTT SQLSEVAILE ILADERPPQF AKQEYEVTVS 540
  541 EDNLVDYSVV DVKAQSFRSF EDGRSKGPIT YSLEGDTPED ETKWFRIDPS TGIIHLTRLL 600
  601 DFDDPALPKL HKLKVTARED NRESHVDLTI RIDDVNDNVP TFTRPLYTAQ VREDIPLNQT 660
  661 ILKVTAVDKD TGDNSRITYS VDNHNFSINS NGEISAKVRL DADQLNERHF VYRFNVTARD 720
  721 HGEPVSLSSS AMIHIRTENT NDESAVFLPT SQYTAFVAED AQGGTPVIQI QARDADRDEV 780
  781 TYSFMDKNGR STQKMNLFSI DEHTGLVKLR HGVSAADLAE AENPINLTVI VQDDGSCCVY 840
  841 PSKTHTSYAT LLIGIEDVNN NKPEFPDCAK YSDIAKIMEG TYKTDPPTIV KVEATDDDSS 900
  901 ANGDIVYSLY YTQSESRKAF VIDRQTGVLT PSPHVVFDRE TRPREDVTVK ATDRGDRPLI 960
  961 GFCQFSVEVV DINDNSPQFE RPSYETSVSR FEAVGTSVIT VFAFDNDAAH NAEITYSLEI1020
 1021 DTTAGEEHQN DLDFFELVNR RSGEITLIKP IPMKTQKFIF NVIADDNGIP EALQSSAQVT1080
 1081 LNVLDKQQKA PKWQTSPDCK PGITVDENVE LNKVILRCRA VSSGDSRNSD VIYKLTASGG1140
 1141 PGNKAESKFR QFNKFENGNE WVEVVIMEGL DYEQVNNYTL TLTATDMTSR VASTKTFVVE1200
 1201 VRDVNDVVPQ FTVDLFTGTI DEEMTPNEHL EKTNGKPIVT VKAIDTDSDG PQNEVHYRIV1260
 1261 GEANGEETKH FRIDELTGEI FPNEKFDREK IDMYILTVEA SDRSVSALPG ANGPNKDNVK1320
 1321 VQIVINDVND NAPSFEEQKY IGRVKESEGE GHDVITIKAH DLDKHSNLRY HLIGAGGGRI1380
 1381 PFGVRTDSGT IFVKEPLDFE ASDQYHLVLI ASDGRHNATT NVYIHIEDVN DNAPQFEQQK1440
 1441 YATTVIEEDV DIPKVLFNVH ATDADQDEKS SRIVYRLEGQ GADEVFRIGK YSGTIELVKA1500
 1501 LDRDPPAGVP SWNFVVQAID DDGNGLVGYA DVQVNVRDIN DNSPIFPERL FGYIEENREP1560
 1561 IHSDGVYFMD VQARDFDDPT TENANIEYGI VRNKLINGES VFRIDQNTGK IFAMRSLDRE1620
 1621 ISSEREFIIE VRANDRGVPS REGFANVTIK VTDMNDNAPF FEKTRYEGSV EETAPIGAAV1680
 1681 MSFSAFDADE EAKDNVFTYQ LSEESDYFYV TTDKDSKQSS VGVLRVKQPL DYEDVTQRDG1740
 1741 FHLGIRVSDG RHDAEAAVHV ALVDRNDHAP HIHGATEHRV REDVPRGTSI GRYTATDRDA1800
 1801 GDTARFRINR QSDPKRQFTI DQDGTLRVAH TLDREDIAVY NLIIEAYDNS NNIGRQMVAV1860
 1861 YLQDVNDNGP EPYTVPRPCI FRENTPVNQL GTCEIRATDR DTAEFGPPFT MEVSPSFKYS1920
 1921 QYLNVIFNAN GDGGNGSMTI TPLQEFDREA PVPGKILEIP LILADRAGRR NEASVHVIIG1980
 1981 DLNDNTMHDG RMTIHVNSYL GRLKETVIGR VYVDDADDWD LGDKTFSWKD SRPGFELSDK2040
 2041 GSITMAGEMA AGTYTMSANV HDNARDEDAV GYVTVIVNAV PQIAFDNQGS VQLLIAEETP2100
 2101 LQLPDDFIRA DSNGQSLMDT FKQEMTAYMG GDVTVDVFSV QVGIATLQTR DVPVLNVRFN2160
 2161 ARGSTYRDTA QLNGLIAAHR ADLQRKLNVE IVGVGIDMCK FTQCDAGCQT LNSADYDGIV2220
 2221 VSANSTVIVG VNATSRDDCT CPVWRAPPAC QHSLCHNDGV CHNTNPGFFC ECRNDGLKGA2280
 2281 RCQGTTRSFG GNGFAWYKPM PACTSLNISF SFMTTQSDAL LFYNGPLETL RNDTHIEYSD2340
 2341 YIFIQLRGGR ISLEVSMNGQ SRSSLEVAST ALNDGTWHDI SVNQEGKRVE LVVDNCRFLG2400
 2401 AGADDSSCRA ELYTPDDDER LNIVTPVQIG GLAPLSGQDY PQTIPRAGLN GCVRNLNVNG2460
 2461 DQYDLATPAF EQNSEKGCRL WGATCDSNSV DSLNHCIHGD CFADVQGSGA MVAKCVCDPG2520
 2521 WGGARCERRM EWIQFAQGAF IEYSPRIAFP EQVSDIELLF ISGKVNGAPA ELSFGTDSQQ2580
 2581 SYVSTNLESG QNGVTAAGKF DIGTGGRRAR QELRVSEVLL KENASYWLQF TRNPTRASLS2640
 2641 IDNAYTVSTQ LDKGEPFSLQ VNQITLGTQG QNKGFQGCIG TYRWSKQNLP LKRGGAMDEN2700
 2701 EESIVSISNM AGVQDGCDLR ITCADLPAGY CGGSFVCVDF WKGPFCTCND GANAILGDDG2760
 2761 QVVGCGETLA VSKLGISSPA IILILVSLAL LILLVMMMVV YTRRSPGAFE NVRPEEMNRD2820
 2821 NLRQYGVEGG GEADNDQYSM AGLRKPVMPL DTGMGPAIGG HPPHYPPRGM APPKDDHELN2880
 2881 SKIKDLETDQ NAAPYDELRI YDDERDNISV VTLESIESAQ 

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