YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gly-16
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLKGSFSC VAVYGSLVIF TYLFVAKPSS RPPTDLLDDL EINCTNILQG LKNEKQLELI  60
   61 NTKMIEDKLW NSTDRCHTVK SMFRFNEVPL SEEEARFPLS YGLLVYKELS QVLFMLSSIY 120
  121 QPQNEYCIAV GENSASTFLI LLEELSDCFP NVHFMKRPPI TWGSYEIINS VYDCLKFLSH 180
  181 LKSNWKYFQY LSGVDIPLKT NLEMVRILKS LNGTANVEIK VYENRRLLGQ NETESPLPLF 240
  241 KSSLSSLIPR KAANYLASSS IPQQLLEFLR NTWVADEGFW GTLFGNKGLF DVPGSLNFEE 300
  301 WIYFKENARA NLTKPTDGWF YYISRHQIWF ESGCHNHMKD GSCVFGIGDV SNLLQAKALV 360
  361 AHKLYLTSEP EAYFCLLKEH RRRTLNPDST FDASKYSELP QVEISQDRPV SELTHLNWIL 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	26	0.78
Non-Cytoplasmic	27	420	0.99