YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-54
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFKQNLKK KLTQPNSPRE HSFPGEPAND TISQLVLRRL FDDNYNKNTV PLKTSATVVS  60
   61 VEFGIQNIAQ VSEISASFTL DLLFSQIWHD PRLRFDHLTN CLQNLTLGYS MVEKLWTPNV 120
  121 CFVNSKKTEI HSSPTPNIFL MIYPNGTVWV NYRLQVQSPC MVDLVLFPMD IMNCELIIES 180
  181 YAYNAAKVKL NWREWQPVFS IAKSKLSDFT LYGLQWTKNS FEYAAGQWDQ VSSFCSLNCF 240
  241 SKMDGFQLTV SLTFSRAYGF YILQMYIPTY SSVFLSFVSF WIDLKALPAR ITLGVSSLMA 300
  301 LTFQYGNVAK NLPRVGYVKS IDVYMVLTTA FIFLTMIEVA FVCYLDSENN LRRKERQAEK 360
  361 KKERVAVLQR KKDRKKNNYG ATTVTNANAA ESDLRSNYDE PFSQNGTTSH KISISRQANN 420
  421 MFESLHALAQ FGTFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	256	0.77
Transmembrane Helix	257	281	0.81
Cytoplasmic	282	286	0.69
Transmembrane Helix	287	306	0.83
Non-Cytoplasmic	307	322	0.75
Transmembrane Helix	323	345	0.90
Cytoplasmic	346	435	0.83