YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFARAKFAHH IYRRAERLNL YLDKEEGEIE NLEEEIDETT EKKWWLRTKR WFRLALPHFG  60
   61 LVLLSIGYTL IGALCFHHYE KPYEQQLRNE TSRRIGELKN RVMDQLWRMS NNGTAYSTWR 120
  121 QTANDGMDEL IRDVFWDYTR NYMTPDDVIY GDGPIKWSFM SSIFFSWTAI TTIGYGHIVP 180
  181 RTDEGRVAII FYALLGIPLI LVTIADIGRF LATYIIKLHH GYMAVMSFVT NSCLKCIKWA 240
  241 CCWIRLPRRH IPMPTLELLQ RTQKLYPNNN NPTVAATAAS AGGGTGRRKK QQRDNVSDAG 300
  301 TFDNISEIND GSEGGENENE GEEEEQIQFD PSNHEKRVSV LFILLIMLGY VAGGAYIVRW 360
  361 WEEWTFFEAF YFCFVTVTTI GFGDIVPANV DWLPATLAYI VFGLIITTMC IDLVGSEYIR 420
  421 DIHFYGRSLG RQFMTIGGKV VHLGEVFGYV AFLQKNYGLT AEQLTKLSQL PEEYLLDCLI 480
  481 NGRQPDLNWI GGRPYVPPDI YYFKWIEHPR TLSFASDRVL QSMESLDLNT SRCSTARTLT 540
  541 PREYYQKILF QYCKQLQPEE PIADIDN

Type	Start	End	Confidence
Cytoplasmic	1	53	0.97
Transmembrane Helix	54	76	0.90
Non-Cytoplasmic	77	156	0.98
Transmembrane Helix	157	179	0.89
Cytoplasmic	180	187	0.91
Transmembrane Helix	188	210	0.90
Non-Cytoplasmic	211	219	0.79
Transmembrane Helix	220	239	0.89
Cytoplasmic	240	337	0.94
Transmembrane Helix	338	358	0.93
Non-Cytoplasmic	359	366	0.74
Transmembrane Helix	367	386	0.63
Cytoplasmic	387	394	0.49
Transmembrane Helix	395	415	0.91
Non-Cytoplasmic	416	567	0.54