YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hrg-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQIYSSDVS SITSKSSIAK AEIITMEEEQ QRQSCCTWFH SLKVQIWIAW LGVSAGVMAG  60
   61 TVFAIQYQNW IAVTMCFISS GFATLVLHLH LAYKKTQMAG WSETRLRCLA AVGATVSFLS 120
  121 FIAMVFCLVV AGIEHQTLDK QGLMGANLWI AAVWFFMTSK WSALTWRFAR KYRAFCEESQ 180
  181 PLLAAAPPEY SVTI

Type	Start	End	Confidence
Cytoplasmic	1	45	0.97
Transmembrane Helix	46	65	0.95
Non-Cytoplasmic	66	70	0.82
Transmembrane Helix	71	92	0.94
Cytoplasmic	93	108	0.93
Transmembrane Helix	109	133	0.90
Non-Cytoplasmic	134	142	0.89
Transmembrane Helix	143	164	0.89
Cytoplasmic	165	194	0.98