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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nmr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.46
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRISVIFIW IFLQLGYTID YKVSVLIVSE PNQETFKELK VSVTAAFVEV FGSTSYHLGN  60
   61 DTISAAFVDA KSGDNRLELT QDIVCSQMLN HSLASVIFSP LLTSSSRFID LVTSSAYTLS 120
  121 FYKLPVVGVM VRDAEFSKKN IYPTFVRPTA PLSDEAFVFL HMLLSLKYRQ VVVLSVKRDI 180
  181 NADQFVEEFE KRRVEFKIIV QRYIEVELNE NLNDTLAESF EEVTSNIIVL FAKKDDAVRI 240
  241 FANAGDLTGK GKVWIVSESA GEAHNVPNGS LGCRLGQTAF SVLRDSFSIL KSAMETIFRE 300
  301 SKIDIFPPVE CDRDSVDAEW NSLQAPALLN EICGTSTSRV HFNDKCERIG VEYDIINFHM 360
  361 ERKQVGNMVG DILRLDEDSI EWAGGTKPLE ISLPKHLRVV TVADPPFVYT TPIGSPSQCA 420
  421 ELGNTVVEWS IFDKIVVSGP WYSCPLTLEN STEYFCCAGL AIDLLSNLSL PEANNSIDTS 480
  481 FTFSLHLNES YGVVQASETT GITISGVIGE LDGDTADMAI GGITINPERE RIVDFTEPWL 540
  541 YHGIRILEKN IPRDSPMQSF LQPLQSSLWT ALFISVILVG LAIYCLDFKS PFERFYQADK 600
  601 EMEQDLKKEF ELWIGKDADE NVNFGEAMWF VWGVLLNSGV SEKTPRSCSA RVLGIVWCGF 660
  661 CMIMVASYTA NLAAFLVLDQ PEKGLTGVTD PRLRNPSANF SFGTVLNSNV YQYFKRHVEL 720
  721 SSMFRKMEPH NVRRASEAVH SLLNGSLDAF IWDSTRLEFE AARHCELRTR GSLFGRSAYG 780
  781 IGLQKNSPWT PHITSAILRM SESGVMEKLD QKWIDRGGPN CVVEAHKSPA RLGLVNMKDI 840
  841 FILVSSGVAL GIFLSFVEVS YGRRLADKGR RRRIVTRYFQ KWHDLTLGKK RRPYRLKYNL 900
  901 DRMIVRRGFS GLERCSFQEL RERRQIRGLP TSKVDPYCFW PDLDFKDKPL VLFCSRCRNI 960
  961 VESDVHRETG LFAFLSCFLF AILFLWPCSP LPCFLSSFSD FVHICPLCSH IMGRFRRARS1020
 1021 TRFYV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle