YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146272409
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	36	0.93
Non-Cytoplasmic	37	88	0.93
Transmembrane Helix	89	112	0.82
Cytoplasmic	113	124	0.78
Transmembrane Helix	125	159	0.72
Non-Cytoplasmic	160	171	0.32
Transmembrane Helix	172	195	0.61
Cytoplasmic	196	218	0.59
Transmembrane Helix	219	238	0.61
Non-Cytoplasmic	239	245	0.80
Transmembrane Helix	246	268	0.91
Cytoplasmic	269	305	0.88
Transmembrane Helix	306	327	0.90
Non-Cytoplasmic	328	348	0.79
Transmembrane Helix	349	368	0.84
Cytoplasmic	369	375	0.75
Transmembrane Helix	376	395	0.94
Non-Cytoplasmic	396	409	0.85
Transmembrane Helix	410	430	0.95
Cytoplasmic	431	441	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHTHKEYKN NEKSAIFFEW LIFFVGIIIR IIIYYYGRWQ DKNFNVKFTD VDYYVFSDAA  60
   61 KYVLMNKSPY ERYTYRYTPL LAYIMIPNFF VHFSFGKILF SFIDILVTIL INQIIKIKYT 120
  121 NCKNYIFYTC LWFLNPLVII ISLRGNADVI PCFLIIVTIF CIYKKHIFLS SIFYGLAVNF 180
  181 KIYTIIYALP FMLYLNKNYL LGENIFQLNE KKKKKKNDFL LNTFFYIFRI ISNFFVELFK 240
  241 LNYEQFLFAI CSSSVFLILN CVFYIIYGYE FLYESFIYHI IRRDHRHNFS LFFYLMYLSI 300
  301 EKNSKIIPLI TFVPQIILVA LFGFKYARTN LELSMFLQTI SFIALNKVCT SQYFIWCIPF 360
  361 LPIILCAITL SKRNMFLIIS SILFFIVAKL HWLWWAYYLE FRGYNTFLQL FYSSVLFVIS 420
  421 EISICWVFMY INFKEQKTKI T