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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gar-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNYTVPPDP ADTSWDSPYS IPVQIVVWII IIVLSLETII GNAMVVMAYR IERNISKQVS  60
   61 NRYIVSLAIS DLIIGIEGFP FFTVYVLNGD RWPLGWVACQ TWLFLDYTLC LVSILTVLLI 120
  121 TADRYLSVCH TAKYLKWQSP TKTQLLIVMS WLLPAIIFGI MIYGWQAMTG QSTSMSGAEC 180
  181 SAPFLSNPYV NMGMYVAYYW TTLVAMLILY KGIHQAAKNL EKKAKAKERR HIALILSQRL 240
  241 GTQVGVSLML QSKAEKEKAE EAQKDSGYTS NQAGGSLNTE NDQNLGVIEE ERSGFLSRRE 300
  301 SNESYYPGPH PTAANSRRCS EMEKVSLLSE SDGVPSTRPA KSYGRLSLRS RYSASESITT 360
  361 THENDEKEVE KADSLQKLFA DDELGSVLNF KEEKLKNTDS NNDSDTTSVI LQRSRKYKKN 420
  421 KRPRSSRRSE HSTPRQIAKV KQAEGTAAQL IEESVPDDDQ TETIEVKRTD RWVVSMKKRI 480
  481 ARALIRRRST TRPERGSSSN SEKISTISTV ITREKVISSI FAPIAVFNRG RKQTKAEKRA 540
  541 HKAFRTITFI VGFFAILWSP YYIMATVYGF CKGECIPSFL YTLSYYMCYL NSSGNPFAYA 600
  601 LANRQFRSAF MRMFRGNFNK VA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle