YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.98
Transmembrane Helix	95	116	0.88
Non-Cytoplasmic	117	122	0.74
Transmembrane Helix	123	143	0.89
Cytoplasmic	144	197	0.58
Transmembrane Helix	198	228	0.73
Non-Cytoplasmic	229	283	0.69
Transmembrane Helix	284	307	0.87
Cytoplasmic	308	361	0.70
Transmembrane Helix	362	384	0.89
Non-Cytoplasmic	385	401	0.75
Transmembrane Helix	402	424	0.83
Cytoplasmic	425	437	0.76
Transmembrane Helix	438	459	0.92
Non-Cytoplasmic	460	465	0.69
Transmembrane Helix	466	488	0.81
Cytoplasmic	489	495	0.80
Transmembrane Helix	496	521	0.88
Non-Cytoplasmic	522	823	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHILSPIG VNEGEILAYD VNVTQNYTKS RQADVINQTV FDKTYLFKPE YLSLTGKIAF  60
   61 HLKSIGKWKR KEWIQFARGR IPITMWLPRY TWKSNFLVDF LGGLMVSVLS VPQSLAYGML 120
  121 VGVPPSYGLI TGIIGPIIYA LFGTSKHSSP GAFAIVSLMV GTVVESFGDV GSTNGTIDSN 180
  181 VDLLCCRENK PRVSDGDAIG IAASVTLLVG LFQILFGLLN AGLLAVWLSD QLVQGLISGA 240
  241 AVHVLTSQLK SMTRISNVPP TSEPFQNVVF YMCFFKQMPD VDYASIIISV ICVVLLLIST 300
  301 LVIDPWLCKK VPVKFPMELV LVVSMTLTVH YTRNTAYEFQ IPTVGQVTSG IPAPVIPPMR 360
  361 NAFGMMGSAM SIAIISFVIH ISLCKLISKK LQYVVNSNQE WFALGLMHTT SSFFGCFAGG 420
  421 SSLGRTMMQV KCGTKSQLST LITSIVLIIF VCGGAVGCIQ HLPKPVLASI VVVAMKDLFI 480
  481 QIFTCFALRK LSFVDYLIFA ATFISVIVLN VNFGLLIGVV FELLTVVLRS QWADSSLLGR 540
  541 ITGTNHYRRL GLYETANDIP GIKIFRFDSP IYFGNSEMFV RKIHQACGLN PLIVRGELET 600
  601 ENKKKDARKE KEEEDAEIPK ETEKETKLEV TTHQAKVLDE KHAEPEPNPA DQYERLTHII 660
  661 IDCSTIIYVD LMGQGALKDV YNDYKTIGIS VLFANTNEHV RQNFETSQFF EEVPRGRMFV 720
  721 SVSDAVDQAE LEQRHKTETV QTTAAPKATV VPPVAKSVGQ KSVPITEPVL VPIQSSASLV 780
  781 TGIDFSMKEN TAKGGKFPNP TRKLRVPSKL SLMEELEKTD KTQ