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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ptp-3
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPATTIAA INNNFRKFFI LFLLLLAPTC RGQQKVPSAP RNFNAELTSA TSVKLTWDAP  60
   61 AAANGALLGY YVYLDRMVNG EPVVEKGSKK RIVMIRDSSK RYFELDSLDP NTEYSFRLNA 120
  121 FNRNGDGEFS ERKSIITQGI PPEAPEIVSV SLDRDEPPVV ARIEWKMPKM KPNETPIEKY 180
  181 NLWLRAQGYP DSYVKAKTVD GTDLSTTISG LWMGVVYDVL LAAENREGRS QNATETIATP 240
  241 VGSPDGEPID VQYEVMKGKI VVSWRPPSEE KRNGNITSYK AILSAMDATA DRYEQPVPAP 300
  301 STSSTFEVNV RRAYLFKVAA ATMKGIGPYS PVLTINPDPA ALVGPPTNVR VEATSNSTAV 360
  361 VQWDFESQKA DSFVVKYMHE PGNRMDTEKW KQLPVVSIDK ENPKRFAVVS DLNAHKPYAF 420
  421 CVLAVKNNRQ GPCSDPPTVL ESVTPTYMVQ NLRVLWKTSN SVQLTWEYNG PRNVGFYVNH 480
  481 TGRKDYVNHE LQEKTMSTPG FGQDVDEKHR EYLWTNLRPH MMYTIHVGVR TLPPGARKYW 540
  541 PQEVVTITDP TGPPFVDVPK LVDSSGTQPG QQMIRLTPAT EEYGPISHYW IILVPANYST 600
  601 EDVVNLDPIE LEKATAEKRA QLARSLSVSP SKKLKRKASE VGDDSQSASY HPKEKRARRA 660
  661 TVPGAYVTAR LSADRVKQQY RNNQPFIVGD SQLYDGFTNY PLEHNLHYRL MMRAFAKNDV 720
  721 RTKDSFEQRA PMSEKLSRMY SDSVLTEPFT IKSALRGASQ KSSPWVGACI AFLVLFSIVG 780
  781 MLICWWLRCN KKSAGRHPRH GSITKVALTG NIMNGGGGIP GETSKLLSTS NEYGRQIMNP 840
  841 YEQMNGNHHM ESSMDLYPLP TSHSRSNGYA PVPVAIPSLP NNGNNMTTVS HPAVPIAELA 900
  901 NHIERLRMNN NAGFQSEFES IETGQHFTWE HSSADMNKHK NRYANVAAYD HSRVVLSNVE 960
  961 GYPGMDYINA NYVDGYDKPR SYIATQGPLP ETFSDFWRMV WEEQSVTIVM LTNLEERSRV1020
 1021 KCDQYWPSRG TATYGDIEVT LLESVHLAHY TMRTMRLKMV GEPEVREIKH LQYTAWPDHG1080
 1081 VPDHPTPFLI FLKRVKTLNP NDAGPIISHC SAGIGRTGAF IVIDCMLERL RYDNTVDIYG1140
 1141 CVTALRAQRS YMVQTEEQYI FIHDAVLDAV NSGSTEVPAS RLHQHLHILS QPSADQLSGI1200
 1201 DMEFRHLTTL KWTSNRCTVA NLPVNRPKNR MLSAVPYDSN RVIMRLLPGA DGSDYINASW1260
 1261 IDGYKERGAY IATQAPTNET AADFWRAIWE HNSPIIAMLV RTNERGQEQC SDYWPLETGV1320
 1321 QVGMLVVEPM AEYDMKHYHL REFRISDINT REVRTVRQFH FMEWPDVGKP HTADHFLDFV1380
 1381 TQVHNTYAQF GCTGPITVHC CSGAGRTAVF IALSIILDRM RAEHVVDVFT TVKLLRTERQ1440
 1441 NMIQEPEQYH FLYLAAYEYL AAYDNFS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle