YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30586
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.95
Transmembrane Helix	23	48	0.81
Non-Cytoplasmic	49	75	0.86
Transmembrane Helix	76	94	0.88
Cytoplasmic	95	102	0.74
Transmembrane Helix	103	124	0.90
Non-Cytoplasmic	125	131	0.65
Transmembrane Helix	132	150	0.94
Cytoplasmic	151	159	0.87
Transmembrane Helix	160	182	0.92
Non-Cytoplasmic	183	187	0.80
Transmembrane Helix	188	208	0.90
Cytoplasmic	209	266	0.96
Transmembrane Helix	267	289	0.91
Non-Cytoplasmic	290	298	0.78
Transmembrane Helix	299	320	0.87
Cytoplasmic	321	327	0.84
Transmembrane Helix	328	347	0.91
Non-Cytoplasmic	348	355	0.58
Transmembrane Helix	356	375	0.78
Cytoplasmic	376	391	0.61
Transmembrane Helix	392	406	0.40
Non-Cytoplasmic	407	408	0.42
Transmembrane Helix	409	433	0.83
Cytoplasmic	434	464	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSDKLSAD DVLNTLDKSN RHILTCILVC GLAWSPLAFT GLCPSFVVKA SENSSFIGVA  60
   61 DEFDLTGDAS WLAESTTTFY MVGNMIGGMF IPPLADHYGR LPVFVATVLL MAVGGMISAF 120
  121 STSIMMFCIM RMIHGIFYTA AGLAGWVLGY ENTPLRLRFF TSVYFGVMWV VGACFLGLLA 180
  181 YILPDWRYLM FCISVPNIFV ALLIYMTVPE SLHFLVSSQQ NEKIEAWLEK IRGPKGDISA 240
  241 SDIVEDRDEN GSSFKTLCRE MWKHKMFIVY VLVMTYIWIV DTFIYFGLAF YSTNLAGNLY 300
  301 LNFVLMSLVE APAYIFSPIF MNKYGRKVLI SGTHIIAGLS FLGIVLSSEA WHIHFWLLGK 360
  361 FAISCSFMSI YMFASEIFPT DGRNKCIGFC ETLSRFGGML SPYLSHLTAV HALAPAITLS 420
  421 LIAVSGGLLT LILPETLNTK LPSTIAETAS RRQLIDDKSD SSSN