YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30584
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.62
Transmembrane Helix	26	47	0.91
Non-Cytoplasmic	48	64	0.60
Transmembrane Helix	65	88	0.80
Cytoplasmic	89	107	0.64
Transmembrane Helix	108	130	0.90
Non-Cytoplasmic	131	163	0.58
Transmembrane Helix	164	186	0.87
Cytoplasmic	187	200	0.85
Transmembrane Helix	201	221	0.87
Non-Cytoplasmic	222	231	0.84
Transmembrane Helix	232	255	0.91
Cytoplasmic	256	327	0.97
Transmembrane Helix	328	349	0.73
Non-Cytoplasmic	350	376	0.55
Transmembrane Helix	377	401	0.84
Cytoplasmic	402	413	0.46
Transmembrane Helix	414	430	0.41
Non-Cytoplasmic	431	432	0.39
Transmembrane Helix	433	453	0.68
Cytoplasmic	454	466	0.56
Transmembrane Helix	467	489	0.91
Non-Cytoplasmic	490	494	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTATAMLSG ASSTFAGVVG DFDQSSVLWA LIVGIILAFL LGAGMGANDV SNAFGTSVGS  60
   61 GVLTIIQAYI LASIFETLGS VLVGWSVVDT MRKGVVDISQ YENTPKEFLL GQIAVLGGCS 120
  121 AWLLIATVLH MPVSTTHSLV GATIGFSVVL RGFNGIQWMA IVKIVCSWFI SPVLSGIISS 180
  181 IIYMIVDHTV LRTANPLKNG LRALPVFYFV CMAFNALMVF WDGSKLLHFD EIPVWGIVII 240
  241 VLGVGTIAAA FANFVMKPRI RAKIQDSEAP PTPPMFSDVE SARGSAELEE FTEGSVTNQQ 300
  301 KTMSTPGKIR KFFTWLLPDR TRSDSRSITQ LFSTIQVFTA CFAGFAHGAN DVSNAVAPLA 360
  361 AIISVYRTKS VEQKEAVPIY VLLYGVLAIC IGLWTFGHYV IKTVGTKMSE INPASGFTIE 420
  421 FGAAMTSLVA SKLGLPISTT HCLVGSVVAV GALRSEDGVK WSTFRNIFMS WVITLPVSGL 480
  481 ISAGIMLIIK WAAL