YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lit-1
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILIAIIESF IEYLRKIVWV AHVSSNAILA AAQPFYPPPV QDSQPDRPIG YGAFGVVWSV  60
   61 TDPRSGKRVA LKKMPNVFQN LASCKRVFRE IKMLSSFRHD NVLSLLDILQ PANPSFFQEL 120
  121 YVLTELMQSD LHKIIVSPQA LTPDHVKVFV YQILRGLKYL HTANILHRDI KPGNLLVNSN 180
  181 CILKICDFGL ARTWDQRDRL NMTHEVVTQY YRAPELLMGA RRYTGAVDIW SVGCIFAELL 240
  241 QRKILFQAAG PIEQLQMIID LLGTPSQEAM KYACEGAKNH VLRAGLRAPD TQRLYKIASP 300
  301 DDKNHEAVDL LQKLLHFDPD KRISVEEALQ HRYLEEGRLR FHSCMCSCCY TKPNMPSRLF 360
  361 AQDLDPRHES PFDPKWEKDM SRLSMFELRE KMYQFVMDRP ALYGVALCIN PQSAAYKNFA 420
  421 SSSVAQASEL PPSPQAW

Type	Start	End	Confidence
Cytoplasmic	1	16	0.51
Transmembrane Helix	17	36	0.50
Non-Cytoplasmic	37	437	0.98