YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oct-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.77
Transmembrane Helix	21	43	0.82
Non-Cytoplasmic	44	136	0.80
Transmembrane Helix	137	158	0.75
Cytoplasmic	159	166	0.85
Transmembrane Helix	167	185	0.95
Non-Cytoplasmic	186	191	0.81
Transmembrane Helix	192	213	0.93
Cytoplasmic	214	222	0.81
Transmembrane Helix	223	246	0.90
Non-Cytoplasmic	247	251	0.78
Transmembrane Helix	252	271	0.90
Cytoplasmic	272	343	0.97
Transmembrane Helix	344	364	0.89
Non-Cytoplasmic	365	371	0.85
Transmembrane Helix	372	393	0.86
Cytoplasmic	394	399	0.86
Transmembrane Helix	400	419	0.95
Non-Cytoplasmic	420	426	0.74
Transmembrane Helix	427	449	0.88
Cytoplasmic	450	458	0.71
Transmembrane Helix	459	480	0.91
Non-Cytoplasmic	481	487	0.76
Transmembrane Helix	488	508	0.96
Cytoplasmic	509	568	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATKPPDFD FVLEQVGNYG TYQIVFFFII CLPTSLPSAF SAFNIPFVVG NPPHTCHIPE  60
   61 GKEYLRPLTN DTQILSCKQY NETQINVFRA FTSAPVDTYS DRISLVPCQN GWDYDNSTYL 120
  121 DSLVTEFNLV CDQQAWIEIS TTSFYVGSFI GNCLFGYVAD KFGRRRSFFV ILTVLIVCGT 180
  181 ASSFAKDIES FIILRFFTGL AFPALFQIPF IICMEFMGNS GRIFSGLMTS LFFGAAMALL 240
  241 GVVAMFIRRW RQLTFFCNAP FAFYIIYYFF LPESPRWSVS VGKWADAKKQ LKKIAKMNGK 300
  301 SNVDVDELVD SMKNHQNAAE EKETKRSHNV TDLFKTPNLR RKTLIVTYIW VMNAIIYNGL 360
  361 TLNVSNLPVD DYWSFIINGA VELPGYFVVW PLLQCAGRRW TLAATMIVCG IGCVSAMFMP 420
  421 DGYPWLVASA SFIGKFGVGS GFAVIYIFAG ELYPTVVRAI GMGMSSMVAG SGLLLAPHIV 480
  481 NLGKIVKILP LLIMGLMALS AGILTFFLPE TLGAPLPMTI EDAENFGKKP EPDSGMFTQA 540
  541 AKKRESQPLL EPHTPMDRRR RSSRLMNI